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LOC100383078 uncharacterized LOC100383078 [ Zea mays ]

Gene ID: 100383078, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100383078
Gene description
uncharacterized LOC100383078
Locus tag
ZEAMMB73_Zm00001d052543
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G030877
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Genomic context

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Location:
chromosome: 4
Exon count:
13
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (194575805..194583234, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 4 NC_024462.2 (192657315..192664733, complement)

Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103654345 Neighboring gene pentatricopeptide repeat-containing protein At1g22960, mitochondrial Neighboring gene uncharacterized LOC109945900 Neighboring gene membrane-associated phospholipid phosphatase Neighboring gene CBL-interacting protein kinase 14 Neighboring gene uncharacterized LOC118477083

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Transcription factor TGAL4; uncharacterized protein LOC100383078
Names
bZIP transcription factor family protein
basic leucine zipper transcription factor
putative bZIP transcription factor superfamily protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001175749.1 → NP_001169220.1  Transcription factor TGAL4

    See identical proteins and their annotated locations for NP_001169220.1

    Status: PROVISIONAL

    Source sequence(s)
    BT066129
    UniProtKB/TrEMBL
    A0A060CX87, C0PCW0
    Conserved Domains (3) summary
    cd14686
    Location:184 → 235
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:262 → 338
    DOG1; Seed dormancy control
    cl21462
    Location:183 → 235
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    194575805..194583234 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008679367.3 → XP_008677589.1  uncharacterized protein LOC100383078 isoform X1

    See identical proteins and their annotated locations for XP_008677589.1

    UniProtKB/TrEMBL
    A0A060CX87, C0PCW0
    Conserved Domains (3) summary
    cd14686
    Location:184 → 235
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:262 → 338
    DOG1; Seed dormancy control
    cl21462
    Location:183 → 235
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  2. XM_035967041.1 → XP_035822934.1  uncharacterized protein LOC100383078 isoform X2

    UniProtKB/TrEMBL
    A0A3L6F0E1, A0A804NZ41
    Conserved Domains (3) summary
    cd14686
    Location:78 → 129
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:156 → 230
    DOG1; Seed dormancy control
    cl21462
    Location:77 → 129
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  3. XM_035967042.1 → XP_035822935.1  uncharacterized protein LOC100383078 isoform X2

    UniProtKB/TrEMBL
    A0A3L6F0E1, A0A804NZ41
    Conserved Domains (3) summary
    cd14686
    Location:78 → 129
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:156 → 230
    DOG1; Seed dormancy control
    cl21462
    Location:77 → 129
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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