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nr1h4 nuclear receptor subfamily 1, group H, member 4 [ Salmo salar (Atlantic salmon) ]

Gene ID: 100380545, updated on 30-Nov-2023

Summary

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Gene symbol
nr1h4
Gene description
nuclear receptor subfamily 1, group H, member 4
See related
Ensembl:ENSSSAG00000022951
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See nr1h4 in Genome Data Viewer
Location:
chromosome: ssa15
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa15 NC_059456.1 (79947668..79964607, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa15 NC_027314.1 (75325307..75342503, complement)

Chromosome ssa15 - NC_059456.1Genomic Context describing neighboring genes Neighboring gene deleted in malignant brain tumors 1 protein Neighboring gene plasma membrane calcium-transporting ATPase 3-like Neighboring gene solute carrier family 66 member 1 Neighboring gene uncharacterized LOC106572030

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  2. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bile acid signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bile acid receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001173830.1 → NP_001167301.1  bile acid receptor

    See identical proteins and their annotated locations for NP_001167301.1

    Status: PROVISIONAL

    Source sequence(s)
    BT059607
    UniProtKB/TrEMBL
    A0A1S3MD78, C0HBA1
    Related
    ENSSSAP00000126846.1, ENSSSAT00000156967.1
    Conserved Domains (3) summary
    cd06929
    Location:290 → 482
    NR_LBD_F1; Ligand-binding domain of nuclear receptor family 1
    cl02596
    Location:130 → 213
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
    pfam15636
    Location:2 → 38
    Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059456.1 Reference Ssal_v3.1

    Range
    79947668..79964607 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014145656.2 → XP_014001131.1  bile acid receptor isoform X1

    UniProtKB/TrEMBL
    A0A1S3MD78, A0A1S3MDW7
    Conserved Domains (2) summary
    cd06929
    Location:290 → 481
    NR_LBD_F1; Ligand-binding domain of nuclear receptor family 1
    cl02596
    Location:130 → 213
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers

RNA

  1. XR_006759075.1 RNA Sequence

  2. XR_006759076.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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