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snn stannin [ Salmo salar (Atlantic salmon) ]

Gene ID: 100380339, updated on 30-Nov-2023

Summary

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Gene symbol
snn
Gene description
stannin
See related
Ensembl:ENSSSAG00000101014
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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Location:
chromosome: ssa06
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa06 NC_059447.1 (38941801..38950455)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa06 NC_027305.1 (35811570..35815824)

Chromosome ssa06 - NC_059447.1Genomic Context describing neighboring genes Neighboring gene protein LOC562437-like Neighboring gene mesothelin a Neighboring gene recQ-mediated genome instability protein 2-like Neighboring gene lipopolysaccharide-induced TNF factor Neighboring gene zinc finger CCCH domain-containing protein 7A Neighboring gene phospholipase A2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
stannin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001173624.1 → NP_001167095.1  stannin

    See identical proteins and their annotated locations for NP_001167095.1

    Status: PROVISIONAL

    Source sequence(s)
    BT059093
    UniProtKB/TrEMBL
    C0H9T7
    Related
    ENSSSAP00000146740.1, ENSSSAT00000223408.1
    Conserved Domains (1) summary
    cd20257
    Location:4 → 87
    Stannin

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059447.1 Reference Ssal_v3.1

    Range
    38941801..38950455
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045719492.1 → XP_045575448.1  stannin isoform X1

    UniProtKB/TrEMBL
    C0H9T7
    Conserved Domains (1) summary
    cd20257
    Location:4 → 87
    Stannin

  2. XM_045719493.1 → XP_045575449.1  stannin isoform X1

    UniProtKB/TrEMBL
    C0H9T7
    Conserved Domains (1) summary
    cd20257
    Location:4 → 87
    Stannin
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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