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gucy1b1 guanylate cyclase 1 soluble subunit beta 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100379900, updated on 8-Mar-2024

Summary

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Official Symbol
gucy1b1provided by Xenbase
Official Full Name
guanylate cyclase 1 soluble subunit beta 1provided by Xenbase
Primary source
Xenbase:XB-GENE-950986
See related
Ensembl:ENSXETG00000022399
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
gucy1b3
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (53830356..53868356, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (44603591..44641932, complement)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene platelet derived growth factor C Neighboring gene acid sensing ion channel subunit family member 5 Neighboring gene tryptophan 2,3-dioxygenase Neighboring gene guanylate cyclase 1 soluble subunit alpha 1 Neighboring gene microtubule associated protein 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables guanylate cyclase activity IEA
Inferred from Electronic Annotation
more info
  
enables heme binding IEA
Inferred from Electronic Annotation
more info
  
enables lyase activity IEA
Inferred from Electronic Annotation
more info
  
enables phosphorus-oxygen lyase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cGMP biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cyclic nucleotide biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
guanylate cyclase soluble subunit beta-1
Names
guanylate cyclase 1, soluble, beta 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    53830356..53868356 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004911157.3 → XP_004911214.1  guanylate cyclase soluble subunit beta-1 isoform X1

    UniProtKB/TrEMBL
    A0A8J0R0S7
    Conserved Domains (3) summary
    pfam00211
    Location:412 → 605
    Guanylate_cyc; Adenylate and Guanylate cyclase catalytic domain
    pfam07701
    Location:207 → 406
    HNOBA; Heme NO binding associated
    pfam07700
    Location:2 → 166
    HNOB; Haem-NO-binding

  2. XM_002933474.4 → XP_002933520.1  guanylate cyclase soluble subunit beta-1 isoform X2

    UniProtKB/TrEMBL
    A0A6I8SB16
    Related
    ENSXETP00000094102.2, ENSXETT00000098023.2
    Conserved Domains (3) summary
    pfam00211
    Location:412 → 605
    Guanylate_cyc; Adenylate and Guanylate cyclase catalytic domain
    pfam07701
    Location:207 → 406
    HNOBA; Heme NO binding associated
    pfam07700
    Location:2 → 166
    HNOB; Haem-NO-binding
Nucleotide Protein Strain
Heading Accession and Version

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