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hdac6 histone deacetylase 6 [ Xenopus (Silurana) tropicalis (western clawed frog) ]

Gene ID: 100379853, updated on 13-Jul-2014
Official Symbol
hdac6provided by Xenbase
Official Full Name
histone deacetylase 6provided by Xenbase
Primary source
Xenbase:XB-GENE-5873935
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus (Silurana) tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
hd6; jm21
See hdac6 in MapViewer
Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
101 current Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004669238.1 (2541..13932, complement)

NW_004669238.1Genomic Context describing neighboring genes

Genomic Sequence:
NW_004669238 unplaced scaffold reference Xtropicalis_v7 Primary Assembly

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Homology

  • Homologs of the hdac6 gene: The hdac6 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, zebrafish, fruit fly, mosquito, and C.elegans.
Preferred Names
histone deacetylase 6
Names
histone deacetylase 6

RefSeqs of Annotated Genomes: Xenopus (Silurana) tropicalis Annotation Release 101

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xtropicalis_v7 Primary Assembly

Genomic

  1. NW_004669238.1 

    Range
    2541..13932
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004920346.1XP_004920403.1  

    Conserved Domains (3) summary
    cd10003
    Location:554907
    Blast Score: 1781
    HDAC6-dom2; Histone deacetylase 6, domain 2
    pfam02148
    Location:11521214
    Blast Score: 240
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
    cl17011
    Location:122498
    Blast Score: 1591
    Arginase_HDAC; Arginase-like and histone-like hydrolases
  2. XM_004920345.1XP_004920402.1  

    Conserved Domains (3) summary
    cd10003
    Location:526879
    Blast Score: 1782
    HDAC6-dom2; Histone deacetylase 6, domain 2
    pfam02148
    Location:11241186
    Blast Score: 239
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
    cl17011
    Location:94470
    Blast Score: 1592
    Arginase_HDAC; Arginase-like and histone-like hydrolases
  3. XM_004920341.1XP_004920398.1  

    See proteins identical to XP_004920398.1

    Conserved Domains (3) summary
    cd10003
    Location:554907
    Blast Score: 1781
    HDAC6-dom2; Histone deacetylase 6, domain 2
    pfam02148
    Location:11521214
    Blast Score: 238
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
    cl17011
    Location:122498
    Blast Score: 1592
    Arginase_HDAC; Arginase-like and histone-like hydrolases
  4. XM_004920349.1XP_004920406.1  

    Conserved Domains (3) summary
    cd10003
    Location:339692
    Blast Score: 1778
    HDAC6-dom2; Histone deacetylase 6, domain 2
    pfam02148
    Location:937999
    Blast Score: 237
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
    cl17011
    Location:1283
    Blast Score: 1385
    Arginase_HDAC; Arginase-like and histone-like hydrolases
  5. XM_004920342.1XP_004920399.1  

    See proteins identical to XP_004920399.1

    Conserved Domains (3) summary
    cd10003
    Location:554907
    Blast Score: 1781
    HDAC6-dom2; Histone deacetylase 6, domain 2
    pfam02148
    Location:11521214
    Blast Score: 238
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
    cl17011
    Location:122498
    Blast Score: 1592
    Arginase_HDAC; Arginase-like and histone-like hydrolases
  6. XM_004920343.1XP_004920400.1  

    See proteins identical to XP_004920400.1

    Conserved Domains (3) summary
    cd10003
    Location:554907
    Blast Score: 1781
    HDAC6-dom2; Histone deacetylase 6, domain 2
    pfam02148
    Location:11521214
    Blast Score: 238
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
    cl17011
    Location:122498
    Blast Score: 1592
    Arginase_HDAC; Arginase-like and histone-like hydrolases
  7. XM_004920344.1XP_004920401.1  

    See proteins identical to XP_004920401.1

    Conserved Domains (3) summary
    cd10003
    Location:554907
    Blast Score: 1781
    HDAC6-dom2; Histone deacetylase 6, domain 2
    pfam02148
    Location:11521214
    Blast Score: 238
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
    cl17011
    Location:122498
    Blast Score: 1592
    Arginase_HDAC; Arginase-like and histone-like hydrolases
  8. XM_004920350.1XP_004920407.1  

    Conserved Domains (3) summary
    cd10003
    Location:554907
    Blast Score: 1780
    HDAC6-dom2; Histone deacetylase 6, domain 2
    pfam02148
    Location:11521214
    Blast Score: 241
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
    cl17011
    Location:122498
    Blast Score: 1593
    Arginase_HDAC; Arginase-like and histone-like hydrolases
  9. XM_004920347.1XP_004920404.1  

    Conserved Domains (3) summary
    cd10003
    Location:514867
    Blast Score: 1781
    HDAC6-dom2; Histone deacetylase 6, domain 2
    pfam02148
    Location:11121174
    Blast Score: 239
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
    cl17011
    Location:122458
    Blast Score: 1644
    Arginase_HDAC; Arginase-like and histone-like hydrolases
  10. XM_004920348.1XP_004920405.1  

    Conserved Domains (3) summary
    cd10003
    Location:554907
    Blast Score: 1786
    HDAC6-dom2; Histone deacetylase 6, domain 2
    pfam02148
    Location:11521214
    Blast Score: 245
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
    cl17011
    Location:122498
    Blast Score: 1595
    Arginase_HDAC; Arginase-like and histone-like hydrolases

RNA

  1. XR_209360.1 RNA Sequence

  2. XR_209359.1 RNA Sequence

  3. XR_209361.1 RNA Sequence