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Fndc9 fibronectin type III domain containing 9 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100362205, updated on 8-Mar-2024

Summary

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Official Symbol
Fndc9provided by RGD
Official Full Name
fibronectin type III domain containing 9provided by RGD
Primary source
RGD:2318580
See related
Ensembl:ENSRNOG00000006549 AllianceGenome:RGD:2318580
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be integral component of membrane. Orthologous to human FNDC9 (fibronectin type III domain containing 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Spleen (RPKM 82.3), Thymus (RPKM 77.9) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
10q21
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (31166051..31170964)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (30664435..30668213)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (31322108..31325634)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene NIPA-like domain containing 4 Neighboring gene uncharacterized LOC134480683 Neighboring gene cytoplasmic FMR1 interacting protein 2 Neighboring gene IL2-inducible T-cell kinase Neighboring gene golgi associated RAB2 interactor family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
fibronectin type III domain-containing protein 9
Names
rCG33426-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    31166051..31170964
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003750803.6 → XP_003750851.1  fibronectin type III domain-containing protein 9

    See identical proteins and their annotated locations for XP_003750851.1

    UniProtKB/TrEMBL
    A6HDR2, D3ZA48
    Related
    ENSRNOP00000008559.2
    Conserved Domains (1) summary
    smart00060
    Location:2 → 82
    FN3; Fibronectin type 3 domain
Nucleotide Protein Strain
Heading Accession and Version

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