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FOXA2 forkhead box A2 [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100352657, updated on 8-Mar-2024

Summary

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Gene symbol
FOXA2
Gene description
forkhead box A2
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 4 NC_067377.1 (21826465..21830783)

Chromosome 4 - NC_067377.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127490981 Neighboring gene somatostatin receptor 4 Neighboring gene uncharacterized LOC103348244 Neighboring gene uncharacterized LOC127490986

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067377.1 Chromosome 4 Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein domain specific binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hepatocyte nuclear factor 3-beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NC_067377.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    21826465..21830783
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051845314.1 → XP_051701274.1  hepatocyte nuclear factor 3-beta isoform X2

  2. XM_008256329.3 → XP_008254551.1  hepatocyte nuclear factor 3-beta isoform X1

    UniProtKB/TrEMBL
    G1SSW6
    Conserved Domains (3) summary
    smart00339
    Location:165 → 253
    FH; FORKHEAD
    pfam08430
    Location:23 → 164
    Forkhead_N; Forkhead N-terminal region
    pfam09354
    Location:387 → 460
    HNF_C; HNF3 C-terminal domain
Nucleotide Protein
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