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DDX39B DExD-box helicase 39B [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100349333, updated on 8-Mar-2024

Summary

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Gene symbol
DDX39B
Gene description
DExD-box helicase 39B
See related
Ensembl:ENSOCUG00000024126
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
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Genomic context

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See DDX39B in Genome Data Viewer
Location:
chromosome: 12
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 12 NC_067385.1 (135382297..135394202)

Chromosome 12 - NC_067385.1Genomic Context describing neighboring genes Neighboring gene RLA class I histocompatibility antigen, alpha chain 11/11 Neighboring gene lymphotoxin alpha Neighboring gene NFKB inhibitor like 1 Neighboring gene ATPase H+ transporting V1 subunit G2 Neighboring gene small nucleolar RNA SNORD83 Neighboring gene small nucleolar RNA SNORD83 Neighboring gene uncharacterized LOC103345076 Neighboring gene ribose-5-phosphate isomerase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067385.1 Chromosome 12 Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spliceosome RNA helicase DDX39B
Names
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
DEAD-box helicase 39B
HLA-B associated transcript 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NC_067385.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    135382297..135394202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051854968.1 → XP_051710928.1  spliceosome RNA helicase DDX39B

  2. XM_008262545.3 → XP_008260767.2  spliceosome RNA helicase DDX39B

RNA

  1. XR_007923016.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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