U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ATG16L1 autophagy related 16 like 1 [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100345122, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ATG16L1
Gene description
autophagy related 16 like 1
See related
Ensembl:ENSOCUG00000015285
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) Unplaced Scaffold NW_026259184.1 (758904..802819)

NW_026259184.1Genomic Context describing neighboring genes Neighboring gene neuraminidase 2 Neighboring gene inositol polyphosphate-5-phosphatase D Neighboring gene uncharacterized LOC127487708 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene small nucleolar RNA SNORA28 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene 60S ribosomal protein L5-like Neighboring gene S-antigen visual arrestin Neighboring gene diacylglycerol kinase delta

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_026259184 Unplaced Scaffold Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative stranded viral RNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
autophagy-related protein 16-1
Names
ATG16 autophagy related 16-like 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NW_026259184.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    758904..802819
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008275243.3 → XP_008273465.1  autophagy-related protein 16-1 isoform X1

    UniProtKB/TrEMBL
    G1TN11
    Related
    ENSOCUP00000018378.1
    Conserved Domains (5) summary
    COG2319
    Location:294 → 621
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:332 → 622
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam08614
    Location:32 → 206
    ATG16; Autophagy protein 16 (ATG16)
    sd00039
    Location:344 → 381
    7WD40; WD40 repeat [structural motif]
    cl23720
    Location:84 → 190
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  2. XM_002721435.4 → XP_002721481.1  autophagy-related protein 16-1 isoform X2

    UniProtKB/TrEMBL
    A0A5F9C5F5
    Related
    ENSOCUP00000028298.1
    Conserved Domains (5) summary
    COG2319
    Location:288 → 604
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:315 → 605
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam08614
    Location:32 → 206
    ATG16; Autophagy protein 16 (ATG16)
    sd00039
    Location:327 → 364
    7WD40; WD40 repeat [structural motif]
    cl23720
    Location:84 → 190
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  3. XM_008275244.3 → XP_008273466.1  autophagy-related protein 16-1 isoform X4

    UniProtKB/TrEMBL
    A0A5F9CD51
    Related
    ENSOCUP00000031509.1
    Conserved Domains (5) summary
    COG2319
    Location:269 → 585
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:296 → 586
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam08614
    Location:32 → 206
    ATG16; Autophagy protein 16 (ATG16)
    sd00039
    Location:308 → 345
    7WD40; WD40 repeat [structural motif]
    cl23720
    Location:84 → 190
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  4. XM_017337521.2 → XP_017193010.1  autophagy-related protein 16-1 isoform X3

  5. XM_051834173.1 → XP_051690133.1  autophagy-related protein 16-1 isoform X5

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.