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snx11 sorting nexin 11 [ Salmo salar (Atlantic salmon) ]

Gene ID: 100306765, updated on 3-Apr-2024

Summary

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Gene symbol
snx11
Gene description
sorting nexin 11
See related
Ensembl:ENSSSAG00000031221
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See snx11 in Genome Data Viewer
Location:
chromosome: ssa19
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa19 NC_059460.1 (54620809..54638183)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa19 NC_027318.1 (50841907..50859366)

Chromosome ssa19 - NC_059460.1Genomic Context describing neighboring genes Neighboring gene uncharacterized si:ch211-194k22.8 Neighboring gene nfe2 like bZIP transcription factor 1b Neighboring gene chromobox homolog 1b (HP1 beta homolog Drosophila) Neighboring gene src kinase-associated phosphoprotein 1 Neighboring gene homeobox B1b Neighboring gene homeobox B3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001165304.1 → NP_001158776.1  sorting nexin-11

    See identical proteins and their annotated locations for NP_001158776.1

    Status: PROVISIONAL

    Source sequence(s)
    BT058719
    UniProtKB/TrEMBL
    A0A1S3NEY3, C0H8R3
    Related
    ENSSSAP00000026974.2, ENSSSAT00000046041.2
    Conserved Domains (1) summary
    cd06898
    Location:14 → 124
    PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059460.1 Reference Ssal_v3.1

    Range
    54620809..54638183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014158519.2 → XP_014013994.2  sorting nexin-11 isoform X1

  2. XM_014158520.2 → XP_014013995.2  sorting nexin-11 isoform X1

  3. XM_045701867.1 → XP_045557823.1  sorting nexin-11 isoform X1

  4. XM_045701865.1 → XP_045557821.1  sorting nexin-11 isoform X1

  5. XM_045701864.1 → XP_045557820.1  sorting nexin-11 isoform X1

  6. XM_014158515.2 → XP_014013990.2  sorting nexin-11 isoform X1

  7. XM_014158521.2 → XP_014013996.2  sorting nexin-11 isoform X1

  8. XM_014158524.2 → XP_014013999.2  sorting nexin-11 isoform X2

  9. XM_014158518.2 → XP_014013993.2  sorting nexin-11 isoform X1

  10. XM_045701866.1 → XP_045557822.1  sorting nexin-11 isoform X1

Nucleotide Protein
Heading Accession and Version

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