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scarb2a scavenger receptor class B, member 2a [ Oryzias latipes (Japanese medaka) ]

Gene ID: 100301630, updated on 8-Mar-2024

Summary

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Gene symbol
scarb2a
Gene description
scavenger receptor class B, member 2a
See related
EnsemblRapid:ENSORLG00000000372
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
zenzai
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 9
Exon count:
13
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 9 NC_019867.2 (1875980..1888311, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 9 NC_019867.1 (500653..509872, complement)

Chromosome 9 - NC_019867.2Genomic Context describing neighboring genes Neighboring gene flavin reductase (NADPH) Neighboring gene serine/threonine-protein phosphatase with EF-hands 2-like Neighboring gene uncharacterized LOC110015591 Neighboring gene coiled-coil domain-containing protein 158 Neighboring gene cyclin-G2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables scavenger receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein targeting to lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in receptor-mediated endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of glucosylceramidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysosome membrane protein 2a; zenzai protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001160470.2 → NP_001153942.1  lysosome membrane protein 2a

    See identical proteins and their annotated locations for NP_001153942.1

    Status: PROVISIONAL

    Source sequence(s)
    AB462409
    UniProtKB/TrEMBL
    A0A3P9H724, A0A3P9KTI0, C0STH5, H2L3X8
    Related
    ENSORLP00000000458.3, ENSORLT00000000458.3
    Conserved Domains (1) summary
    pfam01130
    Location:15 → 455
    CD36; CD36 family

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019867.2 Reference ASM223467v1 Primary Assembly

    Range
    1875980..1888311 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023958062.1 → XP_023813830.1  zenzai protein isoform X2

    UniProtKB/TrEMBL
    A0A3P9H724, A0A3P9M7F9
    Related
    ENSORLP00000039933.2, ENSORLT00000035514.2
    Conserved Domains (1) summary
    pfam01130
    Location:15 → 455
    CD36; CD36 family

  2. XM_023958061.1 → XP_023813829.1  zenzai protein isoform X1

    UniProtKB/TrEMBL
    A0A3P9H724, A0A3P9KTI0, C0STH5, H2L3X8
    Conserved Domains (1) summary
    pfam01130
    Location:15 → 455
    CD36; CD36 family

  3. XM_023958060.1 → XP_023813828.1  zenzai protein isoform X1

    UniProtKB/TrEMBL
    A0A3P9H724, A0A3P9KTI0, C0STH5, H2L3X8
    Conserved Domains (1) summary
    pfam01130
    Location:15 → 455
    CD36; CD36 family
Nucleotide Protein
Heading Accession and Version

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