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foxp4 forkhead box P4 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 100301623, updated on 8-Mar-2024

Summary

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Gene symbol
foxp4
Gene description
forkhead box P4
See related
EnsemblRapid:ENSORLG00000015849
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 5
Exon count:
18
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 5 NC_019863.2 (28293965..28380297)
102 previous assembly ASM31367v1 (GCF_000313675.1) 5 NC_019863.1 (30090196..30178068)

Chromosome 5 - NC_019863.2Genomic Context describing neighboring genes Neighboring gene inhibitor of nuclear factor kappa B kinase subunit epsilon Neighboring gene SLIT-ROBO Rho GTPase activating protein 2 Neighboring gene family with sequence similarity 72 member A Neighboring gene MyoD family inhibitor Neighboring gene transcription factor EB

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The forkhead gene family in medaka: expression patterns and gene evolution. Shen X, et al. Cytogenet Genome Res, 2012. PMID 22286236
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
forkhead box protein P4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001160466.1 → NP_001153938.1  forkhead box protein P4

    See identical proteins and their annotated locations for NP_001153938.1

    Status: PROVISIONAL

    Source sequence(s)
    FJ792675
    UniProtKB/TrEMBL
    A0A3P9HNR4, C1K306, H2MMB3
    Conserved Domains (2) summary
    pfam00250
    Location:312 → 391
    Forkhead; Forkhead domain
    pfam16159
    Location:142 → 209
    FOXP-CC; FOXP coiled-coil domain

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019863.2 Reference ASM223467v1 Primary Assembly

    Range
    28293965..28380297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023954651.1 → XP_023810419.1  forkhead box protein P4 isoform X1

    Related
    ENSORLP00000085132.1, ENSORLT00000077177.1
    Conserved Domains (2) summary
    pfam00250
    Location:496 → 569
    Forkhead; Forkhead domain
    pfam16159
    Location:326 → 393
    FOXP-CC; FOXP coiled-coil domain

  2. XM_020702951.2 → XP_020558610.1  forkhead box protein P4 isoform X1

    Related
    ENSORLP00000088228.1, ENSORLT00000090432.1
    Conserved Domains (2) summary
    pfam00250
    Location:496 → 569
    Forkhead; Forkhead domain
    pfam16159
    Location:326 → 393
    FOXP-CC; FOXP coiled-coil domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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