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LOC100254369 telomere repeat-binding factor 4 [ Vitis vinifera (wine grape) ]

Gene ID: 100254369, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100254369
Gene description
telomere repeat-binding factor 4
Locus tag
VIT_00015170001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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Location:
chromosome: 11
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 11 NC_081815.1 (1528988..1541698)
102 previous assembly 12X (GCF_000003745.3) 11 NC_012017.3 (1530189..1542916)

Chromosome 11 - NC_081815.1Genomic Context describing neighboring genes Neighboring gene dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial Neighboring gene lycopene epsilon cyclase, chloroplastic-like Neighboring gene glycylpeptide N-tetradecanoyltransferase 1 Neighboring gene uncharacterized LOC100244028

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
telomere repeat-binding factor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081815.1 Reference ASM3070453v1 Primary Assembly

    Range
    1528988..1541698
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002281147.5 → XP_002281183.1  telomere repeat-binding factor 4 isoform X2

    See identical proteins and their annotated locations for XP_002281183.1

    UniProtKB/TrEMBL
    D7TCM4
    Conserved Domains (2) summary
    smart00526
    Location:117 → 181
    H15; Domain in histone families 1 and 5
    cd11660
    Location:6 → 56
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

  2. XM_059740733.1 → XP_059596716.1  telomere repeat-binding factor 4 isoform X1

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases