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LOC100253952 probable choline kinase 2 [ Vitis vinifera (wine grape) ]

Gene ID: 100253952, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100253952
Gene description
probable choline kinase 2
Locus tag
VIT_00036594001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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Location:
chromosome: 13
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 13 NC_081817.1 (21561184..21573353)
102 previous assembly 12X (GCF_000003745.3) 13 NC_012019.3 (18824499..18836652)

Chromosome 13 - NC_081817.1Genomic Context describing neighboring genes Neighboring gene probable carboxylesterase 15 Neighboring gene putative RING-H2 finger protein ATL69 Neighboring gene protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1 Neighboring gene DNA-directed RNA polymerase III subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables choline kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ethanolamine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylcholine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylethanolamine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable choline kinase 2
Names
choline/ethanolamine kinase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081817.1 Reference ASM3070453v1 Primary Assembly

    Range
    21561184..21573353
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002265491.5 → XP_002265527.3  probable choline kinase 2 isoform X1

    See identical proteins and their annotated locations for XP_002265527.3

    UniProtKB/TrEMBL
    D7TX42
    Conserved Domains (2) summary
    PLN02236
    Location:101 → 444
    PLN02236; choline kinase
    cd05157
    Location:139 → 437
    ETNK_euk; Euykaryotic Ethanolamine kinase

  2. XM_010660758.3 → XP_010659060.1  probable choline kinase 2 isoform X2

    Conserved Domains (2) summary
    PLN02236
    Location:101 → 444
    PLN02236; choline kinase
    cd05157
    Location:139 → 437
    ETNK_euk; Euykaryotic Ethanolamine kinase

  3. XM_059741806.1 → XP_059597789.1  probable choline kinase 2 isoform X4

  4. XM_010660759.3 → XP_010659061.1  probable choline kinase 2 isoform X3

    Conserved Domains (2) summary
    PLN02236
    Location:31 → 374
    PLN02236; choline kinase
    cd05157
    Location:69 → 367
    ETNK_euk; Euykaryotic Ethanolamine kinase
Nucleotide Protein
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