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SEMA3A semaphorin 3A [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100230255, updated on 8-Mar-2024

Summary

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Gene symbol
SEMA3A
Gene description
semaphorin 3A
See related
Ensembl:ENSTGUG00000002449
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1A
Exon count:
17
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 1A NC_044212.2 (8555544..8719301)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 1A NC_044999.1 (8547825..8711609)

Chromosome 1A - NC_044212.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115498392 Neighboring gene uncharacterized LOC121471168 Neighboring gene semaphorin 3D Neighboring gene semaphorin 3E Neighboring gene piccolo presynaptic cytomatrix protein Neighboring gene uncharacterized LOC115498407

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables neuropilin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in motor neuron axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of neuron migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-3A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044212.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    8555544..8719301
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012568879.4 → XP_012424333.3  semaphorin-3A

    UniProtKB/TrEMBL
    H0YW81
    Conserved Domains (3) summary
    cd11249
    Location:26 → 518
    Sema_3A; The Sema domain, a protein interacting module, of semaphorin 3A (Sema3A)
    smart00409
    Location:586 → 664
    IG; Immunoglobulin
    smart00423
    Location:516 → 552
    PSI; domain found in Plexins, Semaphorins and Integrins
Nucleotide Protein
Heading Accession and Version

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