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NSMCE2 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100226541, updated on 8-Mar-2024

Summary

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Gene symbol
NSMCE2
Gene description
NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase
See related
Ensembl:ENSTGUG00000012507
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 2 NC_044213.2 (139855633..139981506)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 2 NC_045000.1 (141535211..141661348)

Chromosome 2 - NC_044213.2Genomic Context describing neighboring genes Neighboring gene squalene epoxidase Neighboring gene WASH complex subunit 5 Neighboring gene tribbles pseudokinase 1 Neighboring gene uncharacterized LOC116807906

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SUMO ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein sumoylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Smc5-Smc6 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: E3 SUMO-protein ligase NSE2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044213.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    139855633..139981506
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012572116.4 → XP_012427570.4  LOW QUALITY PROTEIN: E3 SUMO-protein ligase NSE2

    UniProtKB/TrEMBL
    H0ZQI4
    Conserved Domains (2) summary
    COG0610
    Location:111 → 217
    COG0610; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ... [Defense mechanisms]
    cd16651
    Location:227 → 296
    SPL-RING_NSE2; SPL-RING finger found in E3 SUMO-protein ligase NSE2 and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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