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SLITRK4 SLIT and NTRK like family member 4 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100225576, updated on 8-Mar-2024

Summary

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Gene symbol
SLITRK4
Gene description
SLIT and NTRK like family member 4
See related
Ensembl:ENSTGUG00000004770
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4A
Exon count:
4
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 4A NC_044216.2 (14039556..14049131)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 4A NC_045003.1 (13981928..13991515)

Chromosome 4A - NC_044216.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105759165 Neighboring gene SLIT and NTRK like family member 2 Neighboring gene uncharacterized LOC121469990 Neighboring gene uncharacterized LOC115495246 Neighboring gene uncharacterized LOC115495247

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of presynapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SLIT and NTRK-like protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044216.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    14039556..14049131
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030272696.3 → XP_030128556.3  SLIT and NTRK-like protein 4 isoform X1

    UniProtKB/TrEMBL
    H0Z2W0
    Conserved Domains (3) summary
    TIGR00864
    Location:502 → 563
    PCC; polycystin cation channel protein
    sd00033
    Location:63 → 84
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:14 → 253
    internalin_A; class 1 internalin InlA

  2. XM_030272698.3 → XP_030128558.3  SLIT and NTRK-like protein 4 isoform X2

    Conserved Domains (3) summary
    TIGR00864
    Location:582 → 643
    PCC; polycystin cation channel protein
    sd00033
    Location:143 → 164
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:94 → 333
    internalin_A; class 1 internalin InlA

  3. XM_030272699.3 → XP_030128559.3  SLIT and NTRK-like protein 4 isoform X1

    UniProtKB/TrEMBL
    H0Z2W0
    Conserved Domains (3) summary
    TIGR00864
    Location:502 → 563
    PCC; polycystin cation channel protein
    sd00033
    Location:63 → 84
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:14 → 253
    internalin_A; class 1 internalin InlA
Nucleotide Protein
Heading Accession and Version

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