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TCERG1 transcription elongation regulator 1 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100222332, updated on 8-Mar-2024

Summary

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Gene symbol
TCERG1
Gene description
transcription elongation regulator 1
See related
Ensembl:ENSTGUG00000000079
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
21
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 13 NC_044225.2 (17692327..17721648)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 13 NC_045012.1 (18088702..18117190)

Chromosome 13 - NC_044225.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115497140 Neighboring gene POU class 4 homeobox 3 Neighboring gene protein phosphatase 2 regulatory subunit Bbeta Neighboring gene serine/threonine kinase 32A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription elongation regulator 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044225.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    17692327..17721648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030284040.3 → XP_030139900.3  transcription elongation regulator 1 isoform X1

    UniProtKB/TrEMBL
    H0YP85
    Conserved Domains (4) summary
    smart00441
    Location:926 → 990
    FF; Contains two conserved F residues
    smart00456
    Location:136 → 168
    WW; Domain with 2 conserved Trp (W) residues
    COG5104
    Location:352 → 931
    PRP40; Splicing factor [RNA processing and modification]
    PRK14951
    Location:238 → 357
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional

  2. XM_030284041.3 → XP_030139901.3  transcription elongation regulator 1 isoform X2

    UniProtKB/TrEMBL
    H0YP85
    Conserved Domains (4) summary
    smart00441
    Location:925 → 989
    FF; Contains two conserved F residues
    smart00456
    Location:136 → 168
    WW; Domain with 2 conserved Trp (W) residues
    COG5104
    Location:352 → 930
    PRP40; Splicing factor [RNA processing and modification]
    PRK14951
    Location:238 → 357
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional

  3. XM_030284042.3 → XP_030139902.3  transcription elongation regulator 1 isoform X3

    UniProtKB/TrEMBL
    H0YP85
    Conserved Domains (4) summary
    smart00441
    Location:905 → 969
    FF; Contains two conserved F residues
    smart00456
    Location:136 → 168
    WW; Domain with 2 conserved Trp (W) residues
    PHA03247
    Location:237 → 340
    PHA03247; large tegument protein UL36; Provisional
    COG5104
    Location:331 → 910
    PRP40; Splicing factor [RNA processing and modification]

  4. XM_030284044.3 → XP_030139904.1  transcription elongation regulator 1 isoform X4

    UniProtKB/TrEMBL
    H0YP85
    Conserved Domains (4) summary
    smart00441
    Location:787 → 842
    FF; Contains two conserved F residues
    smart00456
    Location:136 → 168
    WW; Domain with 2 conserved Trp (W) residues
    COG5104
    Location:271 → 714
    PRP40; Splicing factor [RNA processing and modification]
    pfam01846
    Location:734 → 781
    FF; FF domain

  5. XM_030284045.3 → XP_030139905.1  transcription elongation regulator 1 isoform X5

    UniProtKB/TrEMBL
    H0YP85
    Conserved Domains (4) summary
    smart00441
    Location:766 → 821
    FF; Contains two conserved F residues
    smart00456
    Location:136 → 168
    WW; Domain with 2 conserved Trp (W) residues
    COG5104
    Location:250 → 693
    PRP40; Splicing factor [RNA processing and modification]
    pfam01846
    Location:713 → 760
    FF; FF domain
Nucleotide Protein
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