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actn3 actinin alpha 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100216053, updated on 8-Mar-2024

Summary

Official Symbol
actn3provided by Xenbase
Official Full Name
actinin alpha 3provided by Xenbase
Primary source
Xenbase:XB-GENE-920242
See related
Ensembl:ENSXETG00000011409
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
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Genomic context

Location:
chromosome: 4
Exon count:
21
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (39230523..39271452)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (36805610..36845847)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 4B Neighboring gene RNA binding motif protein 14 Neighboring gene uncharacterized LOC116410365 Neighboring gene uncharacterized LOC116410367 Neighboring gene uncharacterized LOC116410366

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142041.1NP_001135513.1  alpha-actinin-3

    See identical proteins and their annotated locations for NP_001135513.1

    Status: PROVISIONAL

    Source sequence(s)
    BC167932
    UniProtKB/TrEMBL
    A0A6I8SUF4, B4F6M1, F6V4H1
    Related
    ENSXETP00000000063.5, ENSXETT00000000063.5
    Conserved Domains (5) summary
    COG5069
    Location:38378
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    COG5126
    Location:752862
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
    cd00176
    Location:404631
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam08726
    Location:826892
    EFhand_Ca_insen; Ca2+ insensitive EF hand
    pfam00435
    Location:639741
    Spectrin; Spectrin repeat

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    39230523..39271452
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)