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ncbp2 nuclear cap binding protein subunit 2 [ Salmo salar (Atlantic salmon) ]

Gene ID: 100196301, updated on 8-Mar-2024

Summary

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Gene symbol
ncbp2
Gene description
nuclear cap binding protein subunit 2
See related
Ensembl:ENSSSAG00000121185
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
CBP20
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: ssa10
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa10 NC_059451.1 (51419063..51421197)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa10 NC_027309.1 (48406734..48408865)

Chromosome ssa10 - NC_059451.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106560585 Neighboring gene melanotransferrin Neighboring gene SUMO specific peptidase 5 Neighboring gene anosmin 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of full-length sequenced cDNA inserts (FLIcs) from Atlantic salmon (Salmo salar). Andreassen R, et al. BMC Genomics, 2009 Oct 30. PMID 19878547, Free PMC Article
  2. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA cap binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear cap binding complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear cap-binding protein subunit 2
Names
20 kDa nuclear cap-binding protein
NCBP 20 kDa subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001141330.1 → NP_001134802.1  nuclear cap-binding protein subunit 2

    See identical proteins and their annotated locations for NP_001134802.1

    Status: PROVISIONAL

    Source sequence(s)
    BT049152
    UniProtKB/Swiss-Prot
    B5DGH3, C0H859
    UniProtKB/TrEMBL
    B5XDN3
    Conserved Domains (2) summary
    COG0724
    Location:39 → 129
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12240
    Location:41 → 118
    RRM_NCBP2; RNA recognition motif found in nuclear cap-binding protein subunit 2 (CBP20) and similar proteins

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059451.1 Reference Ssal_v3.1

    Range
    51419063..51421197
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014123562.2 → XP_013979037.1  nuclear cap-binding protein subunit 2 isoform X2

    UniProtKB/Swiss-Prot
    B5DGH3, C0H859
    UniProtKB/TrEMBL
    A0A1S3KKA6
    Conserved Domains (1) summary
    cd12240
    Location:41 → 118
    RRM_NCBP2; RNA recognition motif (RRM) found in nuclear cap-binding protein subunit 2 (CBP20) and similar proteins

  2. XM_014123561.2 → XP_013979036.1  nuclear cap-binding protein subunit 2 isoform X1

    UniProtKB/Swiss-Prot
    B5DGH3, C0H859
    UniProtKB/TrEMBL
    A0A1S3KJX1
    Related
    ENSSSAP00000177305.1, ENSSSAT00000221687.1
    Conserved Domains (2) summary
    COG0724
    Location:39 → 139
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12240
    Location:41 → 118
    RRM_NCBP2; RNA recognition motif found in nuclear cap-binding protein subunit 2 (CBP20) and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
C0H859.1 GenPept UniProtKB/Swiss-Prot:C0H859

Gene LinkOut

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