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ptbp1 Polypyrimidine tract-binding protein 1 [ Salmo salar (Atlantic salmon) ]

Gene ID: 100195259, updated on 30-Nov-2023

Summary

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Gene symbol
ptbp1
Gene description
Polypyrimidine tract-binding protein 1
See related
Ensembl:ENSSSAG00000058273
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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Location:
chromosome: ssa17
Exon count:
18
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa17 NC_059458.1 (21190389..21201546)
100 previous assembly ICSASG_v2 (GCF_000233375.1) Unplaced Scaffold NW_012349649.1 (1..9079)

Chromosome ssa17 - NC_059458.1Genomic Context describing neighboring genes Neighboring gene phospholipid phosphatase-related protein type 3-like Neighboring gene paralemmin-1-like Neighboring gene ephrin-A2 Neighboring gene coiled-coil domain-containing protein 122

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Polypyrimidine tract-binding protein 1; polypyrimidine tract-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001140288.1 → NP_001133760.1  Polypyrimidine tract-binding protein 1

    See identical proteins and their annotated locations for NP_001133760.1

    Status: PROVISIONAL

    Source sequence(s)
    BT045589
    UniProtKB/TrEMBL
    B5X3H0
    Related
    ENSSSAP00000064709.2, ENSSSAT00000095605.2
    Conserved Domains (3) summary
    cd12693
    Location:198 → 293
    RRM2_PTBP1_like; RNA recognition motif 2 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins
    TIGR01649
    Location:61 → 574
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    cl17169
    Location:384 → 473
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059458.1 Reference Ssal_v3.1

    Range
    21190389..21201546
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045698468.1 → XP_045554424.1  polypyrimidine tract-binding protein 1 isoform X1

    Related
    ENSSSAP00000064618.2, ENSSSAT00000095461.2

  2. XM_045698470.1 → XP_045554426.1  polypyrimidine tract-binding protein 1 isoform X3

  3. XM_045698469.1 → XP_045554425.1  polypyrimidine tract-binding protein 1 isoform X2

    Related
    ENSSSAP00000064614.2, ENSSSAT00000095454.2
Nucleotide Protein
Heading Accession and Version

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