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pai2b Polyadenylate-binding protein-interacting protein 2B [ Salmo salar (Atlantic salmon) ]

Gene ID: 100195124, updated on 30-Nov-2023

Summary

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Gene symbol
pai2b
Gene description
Polyadenylate-binding protein-interacting protein 2B
See related
Ensembl:ENSSSAG00000045480
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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Location:
chromosome: ssa04
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa04 NC_059445.1 (7668619..7674215, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa04 NC_027303.1 (3329523..3335139)

Chromosome ssa04 - NC_059445.1Genomic Context describing neighboring genes Neighboring gene docking protein 1-like Neighboring gene uncharacterized LOC106602212 Neighboring gene uncharacterized LOC123742565 Neighboring gene zinc finger protein 638-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA regulatory element binding translation repressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Polyadenylate-binding protein-interacting protein 2B; polyadenylate-binding protein-interacting protein 2B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001140153.1 → NP_001133625.1  Polyadenylate-binding protein-interacting protein 2B

    See identical proteins and their annotated locations for NP_001133625.1

    Status: PROVISIONAL

    Source sequence(s)
    BT045336
    UniProtKB/TrEMBL
    B5X2R7
    Related
    ENSSSAP00000042178.2, ENSSSAT00000068674.2
    Conserved Domains (1) summary
    pfam07145
    Location:118 → 133
    PAM2; Ataxin-2 C-terminal region

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059445.1 Reference Ssal_v3.1

    Range
    7668619..7674215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014194631.2 → XP_014050106.1  polyadenylate-binding protein-interacting protein 2B isoform X1

    UniProtKB/TrEMBL
    A0A1S3RDA8
    Conserved Domains (1) summary
    pfam07145
    Location:119 → 134
    PAM2; Ataxin-2 C-terminal region
Nucleotide Protein
Heading Accession and Version

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