U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100194743 EH domain-containing protein 4 [ Salmo salar (Atlantic salmon) ]

Gene ID: 100194743, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100194743
Gene description
EH domain-containing protein 4
See related
Ensembl:ENSSSAG00000061846
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: ssa09
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa09 NC_059450.1 (31459330..31496118)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa09 NC_027308.1 (32786999..32825025)

Chromosome ssa09 - NC_059450.1Genomic Context describing neighboring genes Neighboring gene REST corepressor 1 Neighboring gene TNF receptor-associated factor 3 Neighboring gene uncharacterized LOC123744616 Neighboring gene uncharacterized LOC123724122

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  2. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
EH domain-containing protein 4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001139772.1 → NP_001133244.1  EH domain-containing protein 4

    See identical proteins and their annotated locations for NP_001133244.1

    Status: PROVISIONAL

    Source sequence(s)
    BT044629
    UniProtKB/TrEMBL
    A0A1S3R7Y5, B5X0R0
    Related
    ENSSSAP00000068869.1, ENSSSAT00000101322.2
    Conserved Domains (4) summary
    smart00027
    Location:439 → 529
    EH; Eps15 homology domain
    cd09913
    Location:61 → 301
    EHD; Eps15 homology domain (EHD), C-terminal domain
    pfam16880
    Location:25 → 57
    EHD_N; N-terminal EH-domain containing protein
    pfam18150
    Location:289 → 395
    DUF5600; Domain of unknown function (DUF5600)

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059450.1 Reference Ssal_v3.1

    Range
    31459330..31496118
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials