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    LOC100181178 integrin alpha-6-like [ Ciona intestinalis (vase tunicate) ]

    Gene ID: 100181178, updated on 7-Mar-2013
    Gene symbol
    LOC100181178
    Gene description
    integrin alpha-6-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ciona intestinalis
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona
    Location :
    chromosome: 4
    Sequence :
    Chromosome: 4; NC_020169.1 (2220729..2237834, complement)
    See LOC100181178 in MapViewer

    Chromosome 4 - NC_020169.1Genomic Context describing neighboring genes Neighboring gene pseudouridine-5'-monophosphatase-like Neighboring gene uncharacterized LOC100185897 Neighboring gene transcription factor protein Neighboring gene ras-related protein Rab-27A-like Neighboring gene uncharacterized LOC101243438 Neighboring gene nuclear pore complex protein Nup133-like

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    • ECM-receptor interaction, organism-specific biosystem (from KEGG)
      ECM-receptor interaction, organism-specific biosystemThe extracellular matrix (ECM) consists of a complex mixture of structural and functional macromolecules and serves an important role in tissue and organ morphogenesis and in the maintenance of cell ...
    • ECM-receptor interaction, conserved biosystem (from KEGG)
      ECM-receptor interaction, conserved biosystemThe extracellular matrix (ECM) consists of a complex mixture of structural and functional macromolecules and serves an important role in tissue and organ morphogenesis and in the maintenance of cell ...
    Names
    integrin alpha-6-like

    RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 101

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KH Primary Assembly

    Genomic

    1. NC_020169.1

      Range
      2220729..2237834, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002124651.2 → XP_002124687.2  

      Conserved Domains (3) summary
      smart00191
      Location:394 – 445
      Blast Score: 165
      Int_alpha; Integrin alpha (beta-propellor repeats).
      pfam08441
      Location:492 – 916
      Blast Score: 598
      Integrin_alpha2; Integrin alpha
      pfam13517
      Location:406 – 480
      Blast Score: 97
      VCBS; Family description
    Nucleotide Protein
    Heading Accession and Version
    genomic EAAA01001945.1 (36558..53663) None
    mRNA AK112445.1 None

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • BioSystems
        BioSystems
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Map Viewer
        These links are maintained by the Map Viewer group and are provided when a GeneID is annotated on a map for the same species.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • RefSeq RNAs
        Link to Nucleotide RefSeq RNAs
      • Taxonomy
        Link to related taxonomy entry
      • UniGene
        Links are provided between Gene and UniGene when both databases calculate links to the same mRNA record (gi).

      Links to other resources

      General information

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