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SNHG12 small nucleolar RNA host gene 12 (non-protein coding) [ Bos taurus (cattle) ]

Gene ID: 100174923, updated on 16-Jan-2024

Summary

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Gene symbol
SNHG12
Gene description
small nucleolar RNA host gene 12 (non-protein coding)
See related
Ensembl:ENSBTAG00000048228
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (124850784..124854008)

Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 12 Neighboring gene RAB42, member RAS oncogene family Neighboring gene small nucleolar RNA SNORA16B/SNORA16A family Neighboring gene small nucleolar RNA SNORA44 Neighboring gene small nucleolar RNA SNORA61 Neighboring gene small nucleolar RNA SNORD99 Neighboring gene tRNA selenocysteine 1 associated protein 1 Neighboring gene regulator of chromosome condensation 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Discovery and characterization of 91 novel transcripts expressed in cattle placenta. Kumar CG, et al. BMC Genomics, 2007 May 9. PMID 17488528, Free PMC Article
  2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038147.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    DY042001, EU848421
    Related
    ENSBTAT00000066135.2

  2. NR_038148.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon, compared to variant 1.
    Source sequence(s)
    DY042001, EH132547, EU848421

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    124850784..124854008
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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