ODF2 outer dense fiber of sperm tails 2 [Pongo abelii (Sumatran orangutan)] - Gene

Summary

Gene symbol: ODF2
Gene description: outer dense fiber of sperm tails 2
Locus tag: CR201_G0027580
See related: Ensembl:ENSPPYG00000019655
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Pongo abelii
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 13

Exon count:: 25

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2)	13	NC_071998.2 (119777066..119823443)
RS_2023_04	previous assembly	NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1)	9	NC_071994.1 (104170572..104216360)

Chromosome 13 - NC_071998.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Process	Evidence Code	Pubs
involved_in regulation of cilium assembly	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in centrosome	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: outer dense fiber protein 2

Names: cenexin; outer dense fiber of sperm tails protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001132742.1 → NP_001126214.1 outer dense fiber protein 2

See identical proteins and their annotated locations for NP_001126214.1

Status: PROVISIONAL

Source sequence(s)

CR859926

UniProtKB/Swiss-Prot

Q5R829

UniProtKB/TrEMBL

A0A8I5YNQ3

Related

ENSPPYP00000037284.1, ENSPPYT00000043157.1

Conserved Domains (1) summary

COG1196
Location:241 → 578

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

NC_071998.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Range

119777066..119823443

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_054519440.2 → XP_054375415.1 outer dense fiber protein 2 isoform X24
XM_054519429.2 → XP_054375404.2 outer dense fiber protein 2 isoform X14
XM_054519425.2 → XP_054375400.2 outer dense fiber protein 2 isoform X10
XM_054519433.2 → XP_054375408.2 outer dense fiber protein 2 isoform X18
XM_054519439.2 → XP_054375414.2 outer dense fiber protein 2 isoform X23
XM_009244906.4 → XP_009243181.4 outer dense fiber protein 2 isoform X1
XM_009244907.4 → XP_009243182.3 outer dense fiber protein 2 isoform X2
XM_054519420.2 → XP_054375395.2 outer dense fiber protein 2 isoform X3
XM_054519426.2 → XP_054375401.2 outer dense fiber protein 2 isoform X5
XM_024251755.3 → XP_024107523.3 outer dense fiber protein 2 isoform X4
XM_024251756.3 → XP_024107524.3 outer dense fiber protein 2 isoform X6
XM_054519431.2 → XP_054375406.2 outer dense fiber protein 2 isoform X7
XM_054519435.2 → XP_054375410.2 outer dense fiber protein 2 isoform X11
XM_054519442.2 → XP_054375417.1 outer dense fiber protein 2 isoform X26

UniProtKB/TrEMBL

A0A2J8UJT0, A0A8I5YNX4
XM_054519421.2 → XP_054375396.2 outer dense fiber protein 2 isoform X8
XM_063713879.1 → XP_063569949.1 outer dense fiber protein 2 isoform X16
XM_054519427.2 → XP_054375402.2 outer dense fiber protein 2 isoform X12
XM_054519432.2 → XP_054375407.2 outer dense fiber protein 2 isoform X17
XM_054519438.2 → XP_054375413.2 outer dense fiber protein 2 isoform X22
XM_054519441.2 → XP_054375416.1 outer dense fiber protein 2 isoform X25

UniProtKB/TrEMBL

A0A2J8UJW4
XM_054519424.2 → XP_054375399.2 outer dense fiber protein 2 isoform X9
XM_054519428.2 → XP_054375403.2 outer dense fiber protein 2 isoform X13
XM_054519436.2 → XP_054375411.2 outer dense fiber protein 2 isoform X20
XM_054519434.2 → XP_054375409.2 outer dense fiber protein 2 isoform X19
XM_054519437.2 → XP_054375412.2 outer dense fiber protein 2 isoform X21
XM_054519423.2 → XP_054375398.2 outer dense fiber protein 2 isoform X8
XM_054519422.2 → XP_054375397.2 outer dense fiber protein 2 isoform X8
XM_054519430.2 → XP_054375405.2 outer dense fiber protein 2 isoform X15