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PSMD2 proteasome 26S subunit ubiquitin receptor, non-ATPase 2 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100172819, updated on 26-Mar-2024

Summary

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Gene symbol
PSMD2
Gene description
proteasome 26S subunit ubiquitin receptor, non-ATPase 2
Locus tag
CR201_G0010608
See related
Ensembl:ENSPPYG00000014354
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 2 NC_085928.1 (194303358..194313176)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 3 NC_071988.1 (182085183..182095001)

Chromosome 2 - NC_085928.1Genomic Context describing neighboring genes Neighboring gene ALG3 alpha-1,3- mannosyltransferase Neighboring gene endothelin converting enzyme 2 Neighboring gene calcium/calmodulin dependent protein kinase II inhibitor 2 Neighboring gene eukaryotic translation initiation factor 4 gamma 1 Neighboring gene small nucleolar RNA SNORD66 Neighboring gene family with sequence similarity 131 member A Neighboring gene chloride voltage-gated channel 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • DKFZp459I0428

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables enzyme regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome regulatory particle, base subcomplex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in proteasome storage granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
26S proteasome non-ATPase regulatory subunit 2
Names
proteasome (prosome, macropain) 26S subunit, non-ATPase, 2
proteasome 26S subunit, non-ATPase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001132415.2 → NP_001125887.1  26S proteasome non-ATPase regulatory subunit 2

    See identical proteins and their annotated locations for NP_001125887.1

    Status: PROVISIONAL

    Source sequence(s)
    CR859401
    UniProtKB/Swiss-Prot
    Q5R9I6
    UniProtKB/TrEMBL
    A0A2J8WHA1, I6L5A0
    Related
    ENSPPYP00000016052.2, ENSPPYT00000016696.2
    Conserved Domains (1) summary
    cl28113
    Location:26 → 906
    PC_rep; Proteasome/cyclosome repeat

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_085928.1 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    194303358..194313176
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5R9I6.1 GenPept UniProtKB/Swiss-Prot:Q5R9I6

Gene LinkOut

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Molecular Biology Databases
Miscellaneous