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MKLN1 muskelin 1 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100172508, updated on 3-Apr-2024

Summary

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Gene symbol
MKLN1
Gene description
muskelin 1
Locus tag
CR201_G0030312
See related
Ensembl:ENSPPYG00000018010
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Also known as
Muskelin
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 6 NC_071991.2 (128427761..128810081)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 7 NC_071992.1 (122250349..122637445)

Chromosome 6 - NC_071991.2Genomic Context describing neighboring genes Neighboring gene zinc finger protein 131-like Neighboring gene uncharacterized LOC100939643 Neighboring gene U6 spliceosomal RNA Neighboring gene large ribosomal subunit protein eL27-like Neighboring gene uncharacterized LOC100939744 Neighboring gene ras-related protein Rab-5A-like Neighboring gene podocalyxin like Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • DKFZp468G1027

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
muskelin
Names
muskelin 1, intracellular mediator containing kelch motifs

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001132120.1 → NP_001125592.1  muskelin

    See identical proteins and their annotated locations for NP_001125592.1

    Status: PROVISIONAL

    Source sequence(s)
    CR858822
    UniProtKB/Swiss-Prot
    Q5RB35
    UniProtKB/TrEMBL
    A0A2J8U471, H2PNJ4
    Related
    ENSPPYP00000025343.1, ENSPPYT00000049147.1
    Conserved Domains (4) summary
    PLN02153
    Location:307 → 475
    PLN02153; epithiospecifier protein
    sd00038
    Location:271 → 323
    Kelch; KELCH repeat [structural motif]
    pfam06588
    Location:12 → 207
    Muskelin_N; Muskelin N-terminus
    pfam13415
    Location:282 → 334
    Kelch_3; Galactose oxidase, central domain

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071991.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    128427761..128810081
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024249293.3 → XP_024105061.1  muskelin isoform X1

    UniProtKB/TrEMBL
    H2PNJ4
    Conserved Domains (4) summary
    PLN02153
    Location:284 → 452
    PLN02153; epithiospecifier protein
    sd00038
    Location:248 → 300
    Kelch; KELCH repeat [structural motif]
    pfam06588
    Location:11 → 184
    Muskelin_N; Muskelin N-terminus
    pfam13415
    Location:259 → 311
    Kelch_3; Galactose oxidase, central domain

  2. XM_054558895.2 → XP_054414870.1  muskelin isoform X2

    UniProtKB/TrEMBL
    A0A2J8U466

  3. XM_024249294.3 → XP_024105062.1  muskelin isoform X3

    Conserved Domains (3) summary
    PLN02153
    Location:100 → 268
    PLN02153; epithiospecifier protein
    sd00038
    Location:64 → 116
    Kelch; KELCH repeat [structural motif]
    pfam13415
    Location:75 → 127
    Kelch_3; Galactose oxidase, central domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5RB35.1 GenPept UniProtKB/Swiss-Prot:Q5RB35

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