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RCBTB2 RCC1 and BTB domain containing protein 2 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100172062, updated on 3-Apr-2024

Summary

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Gene symbol
RCBTB2
Gene description
RCC1 and BTB domain containing protein 2
Locus tag
CR201_G0016687
See related
Ensembl:ENSPPYG00000005361
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See RCBTB2 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 14 NC_071999.2 (53450029..53496169, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 13 NC_071998.1 (36138947..36185051, complement)

Chromosome 14 - NC_071999.2Genomic Context describing neighboring genes Neighboring gene PEST proteolytic signal-containing nuclear protein-like Neighboring gene RB transcriptional corepressor 1 Neighboring gene uncharacterized LOC100937467 Neighboring gene lysophosphatidic acid receptor 6 Neighboring gene uncharacterized LOC103892237 Neighboring gene uncharacterized LOC100937858 Neighboring gene uncharacterized LOC134759851 Neighboring gene cysteinyl leukotriene receptor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • DKFZp468A1424, DKFZp468G2212, DKFZp469L0426, DKFZp469P1529

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RCC1 and BTB domain-containing protein 2
Names
regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
regulator of chromosome condensation and BTB domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001131702.1 → NP_001125174.1  RCC1 and BTB domain-containing protein 2 isoform 1

    See identical proteins and their annotated locations for NP_001125174.1

    Status: PROVISIONAL

    Source sequence(s)
    CR858121
    UniProtKB/Swiss-Prot
    Q5R8I9, Q5RCZ7, Q5RE90
    UniProtKB/TrEMBL
    A0A2J8VSE3, A0A8I5YUK9
    Related
    ENSPPYP00000006106.1, ENSPPYT00000006345.2
    Conserved Domains (3) summary
    COG5184
    Location:67 → 340
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    cd18354
    Location:374 → 490
    BTB_POZ_RCBTB2_CHC1L; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in RCC1 and BTB domain-containing protein 2 (RCBTB2)
    cd18529
    Location:487 → 551
    BACK_RCBTB2; BACK (BTB and C-terminal Kelch) domain found in RCC1 and BTB domain-containing protein 2 (RCBTB2)

  2. NM_001135285.1 → NP_001128757.1  RCC1 and BTB domain-containing protein 2 isoform 2

    See identical proteins and their annotated locations for NP_001128757.1

    Status: PROVISIONAL

    Source sequence(s)
    CR857643
    UniProtKB/TrEMBL
    A0A8I5YUK9
    Related
    ENSPPYP00000042306.1, ENSPPYT00000038238.1
    Conserved Domains (4) summary
    smart00225
    Location:371 → 463
    BTB; Broad-Complex, Tramtrack and Bric a brac
    cd14821
    Location:463 → 521
    SPOP_C_like; BACK-like Domain C-terminal to BTB in speckle-type POZ protein (SPOP) and similar proteins
    pfam00415
    Location:200 → 248
    RCC1; Regulator of chromosome condensation (RCC1) repeat
    pfam00651
    Location:364 → 460
    BTB; BTB/POZ domain

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071999.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    53450029..53496169 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054528629.2 → XP_054384604.1  RCC1 and BTB domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A2J8VSF0, A0A8I5TH58

  2. XM_063714661.1 → XP_063570731.1  RCC1 and BTB domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A2J8VSG9

  3. XM_024257576.3 → XP_024113344.1  RCC1 and BTB domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A2J8VSF0, A0A8I5TH58, A0A8I5YUK9
    Related
    ENSPPYP00000034813.1
    Conserved Domains (3) summary
    smart00225
    Location:400 → 492
    BTB; Broad-Complex, Tramtrack and Bric a brac
    cd14821
    Location:492 → 550
    SPOP_C_like; BACK-like Domain C-terminal to BTB in speckle-type POZ protein (SPOP) and similar proteins
    cl27697
    Location:72 → 345
    RCC1; Regulator of chromosome condensation (RCC1) repeat

  4. XM_063714659.1 → XP_063570729.1  RCC1 and BTB domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A2J8VSF0, A0A8I5TH58

  5. XM_063714660.1 → XP_063570730.1  RCC1 and BTB domain-containing protein 2 isoform X2

    UniProtKB/Swiss-Prot
    Q5R8I9, Q5RCZ7, Q5RE90
    UniProtKB/TrEMBL
    A0A2J8VSE3

  6. XM_054528632.2 → XP_054384607.1  RCC1 and BTB domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A2J8VSG9

  7. XM_054528630.2 → XP_054384605.1  RCC1 and BTB domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A2J8VSG9

  8. XM_024257578.3 → XP_024113346.1  RCC1 and BTB domain-containing protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A2J8VSF6, A0A8I5TEV5
    Related
    ENSPPYP00000028480.1
    Conserved Domains (2) summary
    smart00225
    Location:121 → 213
    BTB; Broad-Complex, Tramtrack and Bric a brac
    cd14821
    Location:213 → 271
    SPOP_C_like; BACK-like Domain C-terminal to BTB in speckle-type POZ protein (SPOP) and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5RCZ7.1 GenPept UniProtKB/Swiss-Prot:Q5RCZ7

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