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khsrp KH-type splicing regulatory protein [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100170586, updated on 8-Mar-2024

Summary

Official Symbol
khsrpprovided by Xenbase
Official Full Name
KH-type splicing regulatory proteinprovided by Xenbase
Primary source
Xenbase:XB-GENE-493317
See related
Ensembl:ENSXETG00000021862
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
fbp2; ksrp; fubp2; VgRBP71
Orthologs
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Genomic context

See khsrp in Genome Data Viewer
Location:
chromosome: 3
Exon count:
20
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (141251326..141269618, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (130039451..130057575, complement)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene chromosome 3 C19orf53 homolog Neighboring gene methylthioribose-1-phosphate isomerase 1 Neighboring gene solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 Neighboring gene crumbs 3, cell polarity complex component

Genomic regions, transcripts, and products

General protein information

Preferred Names
far upstream element-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001130359.2NP_001123831.2  far upstream element-binding protein 2

    Status: PROVISIONAL

    Source sequence(s)
    BC167653, CX740512
    UniProtKB/TrEMBL
    A0A6I8QEK1, A0A6I8RHA5
    Related
    ENSXETP00000084822.2, ENSXETT00000068760.2
    Conserved Domains (2) summary
    cd00105
    Location:95157
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam00013
    Location:377442
    KH_1; KH domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    141251326..141269618 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012953523.3XP_012808977.1  far upstream element-binding protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A6I8QEK1, A0A6I8RRT1
    Related
    ENSXETP00000085435.2, ENSXETT00000103147.2
    Conserved Domains (2) summary
    cd00105
    Location:74136
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam00013
    Location:356421
    KH_1; KH domain
  2. XM_012953525.3XP_012808979.1  far upstream element-binding protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A6I8QEK1, A0A8J0SCU6
    Conserved Domains (2) summary
    cd00105
    Location:95157
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam00013
    Location:377442
    KH_1; KH domain
  3. XM_012953524.3XP_012808978.1  far upstream element-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A6I8QEK1, A0A8J0SBT3
    Conserved Domains (2) summary
    cd00105
    Location:95157
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam00013
    Location:377442
    KH_1; KH domain
  4. XM_012953522.3XP_012808976.1  far upstream element-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A6I8QEK1, A0A8J0S5U0
    Conserved Domains (2) summary
    cd00105
    Location:95157
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam00013
    Location:377442
    KH_1; KH domain