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lrrc49 leucine rich repeat containing 49 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100170553, updated on 20-Feb-2016
Symbol
lrrc49provided by Xenbase
Full Name
leucine rich repeat containing 49provided by Xenbase
Primary source
Xenbase:XB-GENE-1011788
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668244.1 (56860597..56913675)

NW_004668244.1Genomic Context describing neighboring genes Neighboring gene La ribonucleoprotein domain family member 6 Neighboring gene zinc finger, DHHC-type containing 12 Neighboring gene uncharacterized LOC105948425 Neighboring gene thrombospondin type 1 domain containing 4

Genomic Sequence:
NW_004668244.1 Unplaced Scaffold Reference Xtropicalis_v7 Primary Assembly

Homology

Preferred Names
leucine-rich repeat-containing protein 49

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001130330.1NP_001123802.1  leucine-rich repeat-containing protein 49

    See identical proteins and their annotated locations for NP_001123802.1

    Status: PROVISIONAL

    Source sequence(s)
    BC167597
    UniProtKB/TrEMBL
    B3DLV6
    Conserved Domains (3) summary
    pfam12799
    Location:233274
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:232288
    LRR_8; Leucine rich repeat
    sd00033
    Location:190211
    LRR_RI; leucine-rich repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus (Silurana) tropicalis Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xtropicalis_v7 Primary Assembly

Genomic

  1. NW_004668244.1 Reference Xtropicalis_v7 Primary Assembly

    Range
    56860597..56913675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012970167.1XP_012825621.1  

    Conserved Domains (3) summary
    pfam12799
    Location:233274
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:232288
    LRR_8; Leucine rich repeat
    sd00033
    Location:190211
    LRR_RI; leucine-rich repeat [structural motif]