U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

zf(ubp)-1 zinc finger (ubiquitin thiolesterase type)-1 [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100170046, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
zf(ubp)-1
Gene description
zinc finger (ubiquitin thiolesterase type)-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
Also known as
Ci-ZF(UBP)-1
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
20
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 1 NC_020166.2 (9830801..9840226, complement)

Chromosome 1 - NC_020166.2Genomic Context describing neighboring genes Neighboring gene sulfotransferase 1C2A Neighboring gene uncharacterized LOC100185368 Neighboring gene 28S ribosomal protein S10, mitochondrial Neighboring gene lysosomal Pro-X carboxypeptidase Neighboring gene testis-expressed protein 49-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_020166.2 Chromosome 1 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A saturation screen for cis-acting regulatory DNA in the Hox genes of Ciona intestinalis. Keys DN, et al. Proc Natl Acad Sci U S A, 2005 Jan 18. PMID 15647365, Free PMC Article
  2. Systematic analysis of embryonic expression profiles of zinc finger genes in Ciona intestinalis. Miwata K, et al. Dev Biol, 2006 Apr 15. PMID 16519883

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ubiquitin carboxyl-terminal hydrolase 5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020166.2 Reference KH Primary Assembly

    Range
    9830801..9840226 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002122435.5 → XP_002122471.2  ubiquitin carboxyl-terminal hydrolase 5

    UniProtKB/TrEMBL
    Q1RL26
    Conserved Domains (5) summary
    COG5207
    Location:16 → 836
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:321 → 835
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    cd14386
    Location:703 → 745
    UBA2_UBP5; UBA2 domain found in ubiquitin carboxyl-terminal hydrolase 5 (UBP5)
    pfam02148
    Location:192 → 265
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
    cl21463
    Location:648 → 688
    UBA_like_SF; UBA domain-like superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases