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hdac7 histone deacetylase 7 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100158627, updated on 8-Mar-2024

Summary

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Official Symbol
hdac7provided by Xenbase
Official Full Name
histone deacetylase 7provided by Xenbase
Primary source
Xenbase:XB-GENE-488662
See related
Ensembl:ENSXETG00000010661
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
hdac7a
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
26
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (144067977..144257892)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (140824117..141018471)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene transmembrane protein 106C Neighboring gene vitamin D receptor Neighboring gene twist family bHLH transcription factor 2 Neighboring gene uncharacterized LOC108645815

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within chromatin organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
  
located_in intracellular organelle IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
histone deacetylase 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    144067977..144257892
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004911916.4 → XP_004911973.2  histone deacetylase 7 isoform X3

    UniProtKB/TrEMBL
    A0A6I8R419, A0A8J0R1L8
    Related
    ENSXETP00000075984.2, ENSXETT00000102800.2
    Conserved Domains (1) summary
    cd10008
    Location:482 → 859
    HDAC7; Histone deacetylase 7

  2. XM_004911917.4 → XP_004911974.2  histone deacetylase 7 isoform X4

    UniProtKB/TrEMBL
    A0A8J0R183, F7B2R7
    Related
    ENSXETP00000023344.5, ENSXETT00000023344.5
    Conserved Domains (1) summary
    cd10008
    Location:441 → 818
    HDAC7; Histone deacetylase 7

  3. XM_002935655.5 → XP_002935701.3  histone deacetylase 7 isoform X1

    UniProtKB/TrEMBL
    A0A6I8R419, A0A6I8RUJ2
    Related
    ENSXETP00000086414.2, ENSXETT00000081543.2
    Conserved Domains (1) summary
    cd10008
    Location:539 → 916
    HDAC7; Histone deacetylase 7

  4. XM_004911915.4 → XP_004911972.2  histone deacetylase 7 isoform X2

    UniProtKB/TrEMBL
    A0A5S6P092, A0A6I8T127
    Related
    ENSXETP00000099914.2, ENSXETT00000079644.2
    Conserved Domains (1) summary
    cd10008
    Location:498 → 875
    HDAC7; Histone deacetylase 7
Nucleotide Protein Strain
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