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CFAP46 cilia and flagella associated protein 46 [ Sus scrofa (pig) ]

Gene ID: 100158140, updated on 8-Mar-2024

Summary

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Official Symbol
CFAP46provided by VGNC
Official Full Name
cilia and flagella associated protein 46provided by VGNC
Primary source
VGNC:VGNC:86601
See related
Ensembl:ENSSSCG00000010768
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
TTC40
Expression
Biased expression in lung (RPKM 2.1), ovary (RPKM 2.1) and 4 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CFAP46 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
61
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (140916089..141002805, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (152888318..152926967, complement)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102168165 Neighboring gene inositol polyphosphate-5-phosphatase A Neighboring gene NK6 homeobox 2 Neighboring gene adhesion G protein-coupled receptor A1 Neighboring gene kinase non-catalytic C-lobe domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in axoneme assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cilium movement involved in cell motility IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cilia- and flagella-associated protein 46
Names
tetratricopeptide repeat domain 40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    140916089..141002805 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021073900.1 → XP_020929559.1  cilia- and flagella-associated protein 46 isoform X1

    UniProtKB/TrEMBL
    A0A8D2A1S7

  2. XM_021073902.1 → XP_020929561.1  cilia- and flagella-associated protein 46 isoform X3

    UniProtKB/TrEMBL
    A0A8D2A1S7
    Related
    ENSSSCP00000011480.4, ENSSSCT00000011782.5

  3. XM_021073901.1 → XP_020929560.1  cilia- and flagella-associated protein 46 isoform X2

    UniProtKB/TrEMBL
    A0A8D2A1S7

  4. XM_021073905.1 → XP_020929564.1  cilia- and flagella-associated protein 46 isoform X5

    UniProtKB/TrEMBL
    A0A481CHE6

  5. XM_021073906.1 → XP_020929565.1  cilia- and flagella-associated protein 46 isoform X6

    UniProtKB/TrEMBL
    A0A481CHE6

  6. XM_021073904.1 → XP_020929563.1  cilia- and flagella-associated protein 46 isoform X4

    UniProtKB/TrEMBL
    A0A481CHE6

  7. XM_021073907.1 → XP_020929566.1  cilia- and flagella-associated protein 46 isoform X7

    UniProtKB/TrEMBL
    A0A481CHE6

  8. XM_021073910.1 → XP_020929569.1  cilia- and flagella-associated protein 46 isoform X10

    UniProtKB/TrEMBL
    A0A481CHE6

  9. XM_021073908.1 → XP_020929567.1  cilia- and flagella-associated protein 46 isoform X8

    UniProtKB/TrEMBL
    A0A481CHE6

  10. XM_021073909.1 → XP_020929568.1  cilia- and flagella-associated protein 46 isoform X9

    UniProtKB/TrEMBL
    A0A481CHE6

RNA

  1. XR_002338873.1 RNA Sequence

  2. XR_002338871.1 RNA Sequence

  3. XR_002338872.1 RNA Sequence

  4. XR_002338870.1 RNA Sequence

  5. XR_002338869.1 RNA Sequence

Nucleotide Protein
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