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RTKN2 rhotekin 2 [ Sus scrofa (pig) ]

Gene ID: 100157770, updated on 8-Mar-2024

Summary

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Official Symbol
RTKN2provided by VGNC
Official Full Name
rhotekin 2provided by VGNC
Primary source
VGNC:VGNC:92495
See related
Ensembl:ENSSSCG00000039707
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in lung (RPKM 10.7), mixtures (RPKM 1.5) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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See RTKN2 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (65686718..65861385, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (70813516..70848892, complement)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene AT-rich interaction domain 5B Neighboring gene uncharacterized LOC110256700 Neighboring gene microRNA mir-9836 Neighboring gene heterogeneous nuclear ribonucleoprotein K pseudogene Neighboring gene zinc finger protein 365 Neighboring gene homeobox protein OTX2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in hemopoiesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhotekin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    65686718..65861385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021073058.1 → XP_020928717.1  rhotekin-2 isoform X1

    UniProtKB/TrEMBL
    A0A286ZWI9, A0A4X1TUR1, A0A8D0QMK7, A0A8D1LWG0
    Related
    ENSSSCP00000035810.1, ENSSSCT00000038387.2
    Conserved Domains (3) summary
    smart00742
    Location:19 → 74
    Hr1; Rho effector or protein kinase C-related kinase homology region 1 homologues
    cd13249
    Location:285 → 395
    PH_rhotekin2; Anillin Pleckstrin homology (PH) domain
    pfam08174
    Location:98 → 243
    Anillin; Cell division protein anillin

  2. XM_021073059.1 → XP_020928718.1  rhotekin-2 isoform X2

    UniProtKB/TrEMBL
    A0A8D0M2C6, A0A8D0ZFP9, A0A8D1UTS8
    Conserved Domains (2) summary
    cd13249
    Location:227 → 337
    PH_rhotekin2; Anillin Pleckstrin homology (PH) domain
    pfam08174
    Location:40 → 185
    Anillin; Cell division protein anillin

  3. XM_021073060.1 → XP_020928719.1  rhotekin-2 isoform X3

    UniProtKB/TrEMBL
    A0A8D0ZFP9, A0A8D1UTS8
    Conserved Domains (2) summary
    cd13249
    Location:174 → 284
    PH_rhotekin2; Anillin Pleckstrin homology (PH) domain
    pfam08174
    Location:1 → 132
    Anillin; Cell division protein anillin
Nucleotide Protein
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