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DENND4B DENN domain containing 4B [ Sus scrofa (pig) ]

Gene ID: 100157148, updated on 8-Mar-2024

Summary

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Official Symbol
DENND4Bprovided by VGNC
Official Full Name
DENN domain containing 4Bprovided by VGNC
Primary source
VGNC:VGNC:87252
See related
Ensembl:ENSSSCG00000006568
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 12.4), psoas major muscle (RPKM 9.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
31
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (95745878..95762192)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (104648243..104664335)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene solute carrier family 39 member 1 Neighboring gene CREB regulated transcription coactivator 2 Neighboring gene GATA zinc finger domain containing 2B Neighboring gene solute carrier family 27 member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of Rab protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DENN domain-containing protein 4B
Names
DENN/MADD domain containing 4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    95745878..95762192
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013997083.2 → XP_013852537.1  DENN domain-containing protein 4B isoform X1

    UniProtKB/TrEMBL
    A0A4X1VZX5
    Conserved Domains (5) summary
    smart00801
    Location:563 → 636
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:191 → 279
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    sd00004
    Location:813 → 842
    PPR; PPR repeat [structural motif]
    pfam02141
    Location:313 → 497
    DENN; DENN (AEX-3) domain
    cl25449
    Location:811 → 851
    PPR_2; PPR repeat family

  2. XM_021089799.1 → XP_020945458.1  DENN domain-containing protein 4B isoform X2

    UniProtKB/TrEMBL
    A0A287A5Y5, A0A4X1VZX5
    Conserved Domains (5) summary
    smart00801
    Location:563 → 636
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:191 → 279
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    sd00004
    Location:813 → 842
    PPR; PPR repeat [structural motif]
    pfam02141
    Location:313 → 497
    DENN; DENN (AEX-3) domain
    cl25449
    Location:811 → 851
    PPR_2; PPR repeat family

  3. XM_021089798.1 → XP_020945457.1  DENN domain-containing protein 4B isoform X2

    UniProtKB/TrEMBL
    A0A287A5Y5, A0A4X1VZX5
    Related
    ENSSSCP00000039228.3, ENSSSCT00000051089.3
    Conserved Domains (5) summary
    smart00801
    Location:563 → 636
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:191 → 279
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    sd00004
    Location:813 → 842
    PPR; PPR repeat [structural motif]
    pfam02141
    Location:313 → 497
    DENN; DENN (AEX-3) domain
    cl25449
    Location:811 → 851
    PPR_2; PPR repeat family

  4. XM_013997082.2 → XP_013852536.1  DENN domain-containing protein 4B isoform X1

    UniProtKB/TrEMBL
    A0A4X1VZX5
    Conserved Domains (5) summary
    smart00801
    Location:563 → 636
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:191 → 279
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    sd00004
    Location:813 → 842
    PPR; PPR repeat [structural motif]
    pfam02141
    Location:313 → 497
    DENN; DENN (AEX-3) domain
    cl25449
    Location:811 → 851
    PPR_2; PPR repeat family

  5. XM_021089796.1 → XP_020945455.1  DENN domain-containing protein 4B isoform X1

    UniProtKB/TrEMBL
    A0A4X1VZX5
    Conserved Domains (5) summary
    smart00801
    Location:563 → 636
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:191 → 279
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    sd00004
    Location:813 → 842
    PPR; PPR repeat [structural motif]
    pfam02141
    Location:313 → 497
    DENN; DENN (AEX-3) domain
    cl25449
    Location:811 → 851
    PPR_2; PPR repeat family

  6. XM_005663407.3 → XP_005663464.2  DENN domain-containing protein 4B isoform X1

    UniProtKB/TrEMBL
    A0A4X1VZX5
    Conserved Domains (5) summary
    smart00801
    Location:563 → 636
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:191 → 279
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    sd00004
    Location:813 → 842
    PPR; PPR repeat [structural motif]
    pfam02141
    Location:313 → 497
    DENN; DENN (AEX-3) domain
    cl25449
    Location:811 → 851
    PPR_2; PPR repeat family

  7. XM_003481445.4 → XP_003481493.3  DENN domain-containing protein 4B isoform X2

    UniProtKB/TrEMBL
    A0A287A5Y5, A0A4X1VZX5
    Conserved Domains (5) summary
    smart00801
    Location:563 → 636
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:191 → 279
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    sd00004
    Location:813 → 842
    PPR; PPR repeat [structural motif]
    pfam02141
    Location:313 → 497
    DENN; DENN (AEX-3) domain
    cl25449
    Location:811 → 851
    PPR_2; PPR repeat family

RNA

  1. XR_002343434.1 RNA Sequence

  2. XR_002343435.1 RNA Sequence

Nucleotide Protein
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