U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ALDH5A1 aldehyde dehydrogenase 5 family member A1 [ Sus scrofa (pig) ]

Gene ID: 100157072, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
ALDH5A1provided by VGNC
Official Full Name
aldehyde dehydrogenase 5 family member A1provided by VGNC
Primary source
VGNC:VGNC:85241
See related
Ensembl:ENSSSCG00000001090
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in liver (RPKM 43.6), kidney (RPKM 28.1) and 8 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ALDH5A1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (19351485..19375515)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (20501722..20526975)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene doublecortin domain containing 2 Neighboring gene V-type proton ATPase subunit G 1 pseudogene Neighboring gene magnesium transporter MRS2 Neighboring gene glycosylphosphatidylinositol specific phospholipase D1 Neighboring gene KIAA0319 Neighboring gene voltage-dependent calcium channel gamma-like subunit pseudogene Neighboring gene tyrosyl-DNA phosphodiesterase 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Interactions between 4-aminobutyrate aminotransferase and succinic semialdehyde dehydrogenase, two mitochondrial enzymes. Hearl WG, et al. J Biol Chem, 1984 Sep 25. PMID 6470007
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables succinate-semialdehyde dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gamma-aminobutyric acid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
succinate-semialdehyde dehydrogenase, mitochondrial
Names
succinic semialdehyde dehydrogenase
NP_001231396.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001244467.1 → NP_001231396.1  succinate-semialdehyde dehydrogenase, mitochondrial

    Status: PROVISIONAL

    Source sequence(s)
    AK232545
    UniProtKB/TrEMBL
    A0A480YBP1, A0A481AID6, A0A8D0PJS1
    Related
    ENSSSCP00000001161.4, ENSSSCT00000001186.4
    Conserved Domains (2) summary
    TIGR01780
    Location:78 → 528
    SSADH; succinate-semialdehyde dehydrogenase
    PLN02466
    Location:22 → 530
    PLN02466; aldehyde dehydrogenase family 2 member

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    19351485..19375515
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Miscellaneous