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INTS9 integrator complex subunit 9 [ Sus scrofa (pig) ]

Gene ID: 100155552, updated on 8-Mar-2024

Summary

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Official Symbol
INTS9provided by VGNC
Official Full Name
integrator complex subunit 9provided by VGNC
Primary source
VGNC:VGNC:89169
See related
Ensembl:ENSSSCG00000009681
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 14.1), spleen (RPKM 5.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
20
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (12577095..12692440, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (13726714..13790370, complement)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene frizzled class receptor 3 Neighboring gene exostosin like glycosyltransferase 3 Neighboring gene spermidine synthase pseudogene Neighboring gene homeobox containing 1 Neighboring gene uncharacterized LOC110256610 Neighboring gene mitochondrial import inner membrane translocase subunit Tim23 pseudogene Neighboring gene kinesin family member 13B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in snRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of integrator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrator complex subunit 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    12577095..12692440 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001928998.7 → XP_001929033.5  integrator complex subunit 9 isoform X1

    UniProtKB/TrEMBL
    A0A480V2S1, A0A8D0I3Q0, A0A8D0IB30, A0A8D1ZY54
    Related
    ENSSSCP00000058884.2, ENSSSCT00000061864.2
    Conserved Domains (2) summary
    smart01027
    Location:307 → 425
    Beta-Casp; Beta-Casp domain
    cd16294
    Location:1 → 265
    Int9-like_MBL-fold; integrator subunit 9, and related proteins; MBL-fold metallo-hydrolase domain

  2. XM_021072408.1 → XP_020928067.1  integrator complex subunit 9 isoform X3

    UniProtKB/TrEMBL
    A0A4X1V9Z6, A0A8D0LFF6, A0A8D1ZZW9, F1RJQ5
    Related
    ENSSSCP00000010339.3, ENSSSCT00000010615.5
    Conserved Domains (2) summary
    smart01027
    Location:283 → 401
    Beta-Casp; Beta-Casp domain
    cl23716
    Location:60 → 241
    metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain

  3. XM_021072407.1 → XP_020928066.1  integrator complex subunit 9 isoform X2

    UniProtKB/TrEMBL
    A0A8D0IB30
    Conserved Domains (2) summary
    smart01027
    Location:307 → 425
    Beta-Casp; Beta-Casp domain
    cd16294
    Location:1 → 265
    Int9-like_MBL-fold; integrator subunit 9, and related proteins; MBL-fold metallo-hydrolase domain

  4. XM_021072409.1 → XP_020928068.1  integrator complex subunit 9 isoform X3

    UniProtKB/TrEMBL
    A0A4X1V9Z6, A0A8D0LFF6, A0A8D1ZZW9, F1RJQ5
    Conserved Domains (2) summary
    smart01027
    Location:283 → 401
    Beta-Casp; Beta-Casp domain
    cl23716
    Location:60 → 241
    metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain
Nucleotide Protein
Heading Accession and Version

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