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GPALPP1 GPALPP motifs containing 1 [ Sus scrofa (pig) ]

Gene ID: 100155483, updated on 8-Mar-2024

Summary

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Gene symbol
GPALPP1
Gene description
GPALPP motifs containing 1
See related
Ensembl:ENSSSCG00000009419
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 7.8), spleen (RPKM 6.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See GPALPP1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 11 NC_010453.5 (22231358..22267425, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 11 NC_010453.4 (22538554..22570038, complement)

Chromosome 11 - NC_010453.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110255815 Neighboring gene general transcription factor IIF subunit 2 Neighboring gene potassium channel tetramerization domain containing 4 Neighboring gene uncharacterized LOC102159419 Neighboring gene nuclear FMR1 interacting protein 1 Neighboring gene transfer RNA glutamic acid (anticodon UUC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
GPALPP motifs-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010453.5 Reference Sscrofa11.1 Primary Assembly

    Range
    22231358..22267425 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021065611.1 → XP_020921270.1  GPALPP motifs-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A287A3Y1, A0A480VMM2, A0A4X1SE50
    Conserved Domains (1) summary
    pfam12572
    Location:204 → 340
    DUF3752; Protein of unknown function (DUF3752)

  2. XM_001924193.5 → XP_001924228.2  GPALPP motifs-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A287A3Y1, A0A480VMM2, A0A4X1SE50
    Related
    ENSSSCP00000038460.1, ENSSSCT00000058368.2
    Conserved Domains (1) summary
    pfam12572
    Location:204 → 340
    DUF3752; Protein of unknown function (DUF3752)

  3. XM_005668433.3 → XP_005668490.1  GPALPP motifs-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A480VM59, A0A480VU63
    Conserved Domains (1) summary
    pfam12572
    Location:211 → 339
    DUF3752; Protein of unknown function (DUF3752)
Nucleotide Protein
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