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LRRC1 leucine rich repeat containing 1 [ Sus scrofa (pig) ]

Gene ID: 100154780, updated on 8-Mar-2024

Summary

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Official Symbol
LRRC1provided by VGNC
Official Full Name
leucine rich repeat containing 1provided by VGNC
Primary source
VGNC:VGNC:103977
See related
Ensembl:ENSSSCG00000001486
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in kidney (RPKM 5.3), lung (RPKM 4.6) and 6 other tissues See more
Orthologs
human mouse all
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Genomic context

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See LRRC1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (26860138..26989664, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (31302544..31431834, complement)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene muscular LMNA interacting protein Neighboring gene ferritin light chain pseudogene Neighboring gene uncharacterized LOC102166539 Neighboring gene kelch like family member 31

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neurotransmitter receptor transport postsynaptic membrane to endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neurotransmitter receptor transport, endosome to postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    26860138..26989664 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001927688.6 → XP_001927723.2  leucine-rich repeat-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1UIR5, F1RZV9
    Related
    ENSSSCP00000001616.3, ENSSSCT00000001658.5
    Conserved Domains (3) summary
    cd00116
    Location:15 → 232
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:61 → 83
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:198 → 255
    LRR_8; Leucine rich repeat

  2. XM_021098554.1 → XP_020954213.1  leucine-rich repeat-containing protein 1 isoform X2

    Conserved Domains (2) summary
    sd00033
    Location:9 → 31
    LRR_RI; leucine-rich repeat [structural motif]
    cl26018
    Location:65 → 299
    NEL; C-terminal novel E3 ligase, LRR-interacting
Nucleotide Protein
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