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KIF16B kinesin family member 16B [ Sus scrofa (pig) ]

Gene ID: 100154597, updated on 8-Mar-2024

Summary

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Official Symbol
KIF16Bprovided by VGNC
Official Full Name
kinesin family member 16Bprovided by VGNC
Primary source
VGNC:VGNC:106450
See related
Ensembl:ENSSSCG00000007080
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 7.2), kidney (RPKM 7.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
30
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (24882139..25188990, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (28210127..28417272, complement)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene protein FAM60A Neighboring gene uncharacterized LOC102160165 Neighboring gene uncharacterized LOC102159962 Neighboring gene small nuclear ribonucleoprotein polypeptide B2 Neighboring gene otoraplin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule motor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule-based movement IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kinesin-like protein KIF16B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    24882139..25188990 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021078047.1 → XP_020933706.1  kinesin-like protein KIF16B isoform X7

    UniProtKB/TrEMBL
    A0A480J0G1, A0A480LAT3
    Related
    ENSSSCP00000042051.3, ENSSSCT00000053808.3
    Conserved Domains (5) summary
    cd06874
    Location:1185 → 1312
    PX_KIF16B_SNX23; The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23
    cd01365
    Location:2 → 365
    KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
    pfam00498
    Location:478 → 543
    FHA; FHA domain
    pfam16183
    Location:364 → 476
    Kinesin_assoc; Kinesin-associated
    cl25732
    Location:602 → 871
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_021078043.1 → XP_020933702.1  kinesin-like protein KIF16B isoform X2

    UniProtKB/TrEMBL
    A0A8D0TDX1
    Conserved Domains (4) summary
    cd01365
    Location:9 → 357
    KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
    pfam00498
    Location:487 → 552
    FHA; FHA domain
    pfam16183
    Location:356 → 485
    Kinesin_assoc; Kinesin-associated
    cl26511
    Location:614 → 1108
    Neuromodulin_N; Gap junction protein N-terminal region

  3. XM_021078046.1 → XP_020933705.1  kinesin-like protein KIF16B isoform X6

    UniProtKB/TrEMBL
    A0A8D1QR25
    Conserved Domains (4) summary
    pfam00498
    Location:419 → 484
    FHA; FHA domain
    pfam16183
    Location:288 → 417
    Kinesin_assoc; Kinesin-associated
    cl22853
    Location:1 → 289
    Motor_domain; Myosin and Kinesin motor domain
    cl26511
    Location:546 → 1040
    Neuromodulin_N; Gap junction protein N-terminal region

  4. XM_021078045.1 → XP_020933704.1  kinesin-like protein KIF16B isoform X4

    UniProtKB/TrEMBL
    A0A480T151, A0A8D1AGT4, A0A8D1QV49
    Conserved Domains (4) summary
    cd01365
    Location:2 → 365
    KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
    pfam00498
    Location:478 → 543
    FHA; FHA domain
    pfam16183
    Location:364 → 476
    Kinesin_assoc; Kinesin-associated
    cl26511
    Location:605 → 1099
    Neuromodulin_N; Gap junction protein N-terminal region

  5. XM_021078042.1 → XP_020933701.1  kinesin-like protein KIF16B isoform X1

    UniProtKB/TrEMBL
    A0A8D0TDX1
    Conserved Domains (4) summary
    cd01365
    Location:2 → 365
    KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
    pfam00498
    Location:495 → 560
    FHA; FHA domain
    pfam16183
    Location:364 → 493
    Kinesin_assoc; Kinesin-associated
    cl26511
    Location:622 → 1116
    Neuromodulin_N; Gap junction protein N-terminal region

  6. XM_021078044.1 → XP_020933703.1  kinesin-like protein KIF16B isoform X3

    UniProtKB/TrEMBL
    A0A8D0JSB6, A0A8D0TDX1
    Conserved Domains (4) summary
    cd01365
    Location:2 → 365
    KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
    pfam00498
    Location:495 → 560
    FHA; FHA domain
    pfam16183
    Location:364 → 493
    Kinesin_assoc; Kinesin-associated
    cl25732
    Location:614 → 1104
    SMC_N; RecF/RecN/SMC N terminal domain

  7. XM_013985094.2 → XP_013840548.1  kinesin-like protein KIF16B isoform X5

    UniProtKB/TrEMBL
    A0A5G2QMV1, A0A8D0V5H8, A0A8D1KLH3, A0A8D1QTH4
    Related
    ENSSSCP00000059641.1, ENSSSCT00000072944.1
    Conserved Domains (8) summary
    smart00129
    Location:3 → 365
    KISc; Kinesin motor, catalytic domain. ATPase
    cd01365
    Location:2 → 365
    KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
    pfam00498
    Location:478 → 543
    FHA; FHA domain
    pfam13094
    Location:599 → 718
    CENP-Q; CENP-Q, a CENPA-CAD centromere complex subunit
    pfam16183
    Location:364 → 476
    Kinesin_assoc; Kinesin-associated
    pfam17045
    Location:588 → 872
    CEP63; Centrosomal protein of 63 kDa
    cd16269
    Location:797 → 808
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:693 → 828
    GBP_C; Guanylate-binding protein, C-terminal domain
Nucleotide Protein
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