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RBL1 RB transcriptional corepressor like 1 [ Sus scrofa (pig) ]

Gene ID: 100153296, updated on 8-Mar-2024

Summary

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Official Symbol
RBL1provided by VGNC
Official Full Name
RB transcriptional corepressor like 1provided by VGNC
Primary source
VGNC:VGNC:96533
See related
Ensembl:ENSSSCG00000007331
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 7.7), lung (RPKM 4.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
22
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (40201214..40279318, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (45641172..45716781, complement)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene TBC/LysM-associated domain containing 2 Neighboring gene SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 Neighboring gene glucosamine-6-phosphate isomerase 1-like Neighboring gene uncharacterized LOC110257355 Neighboring gene maestro heat like repeat family member 8 Neighboring gene ribophorin II

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of G1/S transition of mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoblastoma-like protein 1
Names
retinoblastoma-like 1 (p107)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    40201214..40279318 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021077348.1 → XP_020933007.1  retinoblastoma-like protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A287AAW9, A0A8D1CSY8
    Related
    ENSSSCP00000040954.1, ENSSSCT00000065011.1
    Conserved Domains (4) summary
    pfam01858
    Location:385 → 578
    RB_A; Retinoblastoma-associated protein A domain
    pfam08934
    Location:902 → 987
    Rb_C; Rb C-terminal domain
    pfam11934
    Location:77 → 209
    DUF3452; Domain of unknown function (DUF3452)
    cl00050
    Location:794 → 883
    CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...

  2. XM_021077347.1 → XP_020933006.1  retinoblastoma-like protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8D1KRL7, A0A8D1N888, A0A8D1WSW1
    Conserved Domains (4) summary
    pfam01858
    Location:385 → 583
    RB_A; Retinoblastoma-associated protein A domain
    pfam08934
    Location:907 → 992
    Rb_C; Rb C-terminal domain
    pfam11934
    Location:77 → 209
    DUF3452; Domain of unknown function (DUF3452)
    cl00050
    Location:799 → 888
    CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...

  3. XM_021077343.1 → XP_020933002.1  retinoblastoma-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TLF1
    Conserved Domains (4) summary
    pfam01857
    Location:792 → 947
    RB_B; Retinoblastoma-associated protein B domain
    pfam01858
    Location:385 → 583
    RB_A; Retinoblastoma-associated protein A domain
    pfam08934
    Location:966 → 1051
    Rb_C; Rb C-terminal domain
    pfam11934
    Location:77 → 209
    DUF3452; Domain of unknown function (DUF3452)

  4. XM_021077349.1 → XP_020933008.1  retinoblastoma-like protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A8D1CSY8
    Conserved Domains (4) summary
    pfam01858
    Location:372 → 565
    RB_A; Retinoblastoma-associated protein A domain
    pfam08934
    Location:889 → 974
    Rb_C; Rb C-terminal domain
    pfam11934
    Location:77 → 209
    DUF3452; Domain of unknown function (DUF3452)
    cl00050
    Location:781 → 870
    CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...

  5. XM_021077346.1 → XP_020933005.1  retinoblastoma-like protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A4X1TLF1
    Related
    ENSSSCP00000031850.2, ENSSSCT00000057141.2
    Conserved Domains (4) summary
    pfam01857
    Location:774 → 929
    RB_B; Retinoblastoma-associated protein B domain
    pfam01858
    Location:372 → 565
    RB_A; Retinoblastoma-associated protein A domain
    pfam08934
    Location:948 → 1033
    Rb_C; Rb C-terminal domain
    pfam11934
    Location:77 → 209
    DUF3452; Domain of unknown function (DUF3452)

  6. XM_021077344.1 → XP_020933003.1  retinoblastoma-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1TLF1
    Related
    ENSSSCP00000045593.1, ENSSSCT00000043540.3
    Conserved Domains (4) summary
    pfam01857
    Location:787 → 942
    RB_B; Retinoblastoma-associated protein B domain
    pfam01858
    Location:385 → 578
    RB_A; Retinoblastoma-associated protein A domain
    pfam08934
    Location:961 → 1046
    Rb_C; Rb C-terminal domain
    pfam11934
    Location:77 → 209
    DUF3452; Domain of unknown function (DUF3452)

  7. XM_021077345.1 → XP_020933004.1  retinoblastoma-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A4X1TLF1
    Conserved Domains (4) summary
    pfam01857
    Location:779 → 934
    RB_B; Retinoblastoma-associated protein B domain
    pfam01858
    Location:372 → 570
    RB_A; Retinoblastoma-associated protein A domain
    pfam08934
    Location:953 → 1038
    Rb_C; Rb C-terminal domain
    pfam11934
    Location:77 → 209
    DUF3452; Domain of unknown function (DUF3452)

  8. XM_021077351.1 → XP_020933010.1  retinoblastoma-like protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A8D0KCY8
    Conserved Domains (4) summary
    pfam01857
    Location:670 → 825
    RB_B; Retinoblastoma-associated protein B domain
    pfam01858
    Location:268 → 461
    RB_A; Retinoblastoma-associated protein A domain
    pfam08934
    Location:844 → 929
    Rb_C; Rb C-terminal domain
    pfam11934
    Location:1 → 105
    DUF3452; Domain of unknown function (DUF3452)

  9. XM_021077350.1 → XP_020933009.1  retinoblastoma-like protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A8D0KCY8
    Conserved Domains (4) summary
    pfam01857
    Location:688 → 843
    RB_B; Retinoblastoma-associated protein B domain
    pfam01858
    Location:281 → 479
    RB_A; Retinoblastoma-associated protein A domain
    pfam08934
    Location:862 → 947
    Rb_C; Rb C-terminal domain
    pfam11934
    Location:1 → 105
    DUF3452; Domain of unknown function (DUF3452)
Nucleotide Protein
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