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STK17B serine/threonine kinase 17b [ Sus scrofa (pig) ]

Gene ID: 100153033, updated on 8-Mar-2024

Summary

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Official Symbol
STK17Bprovided by VGNC
Official Full Name
serine/threonine kinase 17bprovided by VGNC
Primary source
VGNC:VGNC:95527
See related
Ensembl:ENSSSCG00000016067
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in spleen (RPKM 104.6), lung (RPKM 26.9) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (100029987..100066297, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 15 NC_010457.4 (111026262..111052787, complement)

Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110257010 Neighboring gene solute carrier family 39 member 10 Neighboring gene dynein axonemal heavy chain 7 Neighboring gene uncharacterized LOC102157527 Neighboring gene uncharacterized LOC110256941 Neighboring gene HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 Neighboring gene coiled-coil domain containing 150

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Knobbed acrosome defect is associated with a region containing the genes STK17b and HECW2 on porcine chromosome 15. Sironen A, et al. BMC Genomics, 2010 Dec 9. PMID 21143916, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Two candidate genes STK17b and HECW2 for a severe defect affecting both the sperm acrosome and chromatin that causes infertility, were identified.
    Title: Knobbed acrosome defect is associated with a region containing the genes STK17b and HECW2 on porcine chromosome 15.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein kinase 17B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

    Range
    100029987..100066297 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021074823.1 → XP_020930482.1  serine/threonine-protein kinase 17B

    UniProtKB/TrEMBL
    A0A0B8RT41, A0A480DMB9, A0A4X1VIM3, A0A8D0P1Y5, A0A8D0VKX6, A0A8D1SU93
    Related
    ENSSSCP00000070931.1, ENSSSCT00000083961.1
    Conserved Domains (1) summary
    cd14198
    Location:24 → 293
    STKc_DRAK2; The catalytic domain of the Serine/Threonine Kinase, Death-associated protein kinase-Related Apoptosis-inducing protein Kinase 2
Nucleotide Protein Strain
Heading Accession and Version

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