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NIPSNAP1 nipsnap homolog 1 [ Sus scrofa (pig) ]

Gene ID: 100152826, updated on 8-Mar-2024

Summary

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Official Symbol
NIPSNAP1provided by VGNC
Official Full Name
nipsnap homolog 1provided by VGNC
Primary source
VGNC:VGNC:111120
See related
Ensembl:ENSSSCG00000051359
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in liver (RPKM 72.2), kidney (RPKM 41.7) and 5 other tissues See more
Orthologs
human mouse all
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Genomic context

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See NIPSNAP1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (46624368..46641453, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (49658228..49675655, complement)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106505961 Neighboring gene neurofilament heavy chain Neighboring gene THO complex subunit 5 Neighboring gene 40S ribosomal protein S12 pseudogene Neighboring gene NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: protein NipSnap homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    46624368..46641453 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005670786.3 → XP_005670843.2  LOW QUALITY PROTEIN: protein NipSnap homolog 1

    UniProtKB/TrEMBL
    A0A287AGE2
    Related
    ENSSSCP00000043108.2, ENSSSCT00000064755.3
    Conserved Domains (1) summary
    pfam07978
    Location:185 → 282
    NIPSNAP
Nucleotide Protein
Heading Accession and Version

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