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gb:ai877918 expressed sequence AI877918 [ Danio rerio (zebrafish) ]

Gene ID: 100149758, updated on 27-Mar-2024

Summary

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Official Symbol
gb:ai877918provided by ZNC
Official Full Name
expressed sequence AI877918provided by ZNC
Primary source
ZFIN:ZDB-GENE-090506-8
See related
Ensembl:ENSDARG00000100179 AllianceGenome:ZFIN:ZDB-GENE-090506-8
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 21
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (2155127..2163023, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (2129819..2137137, complement)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene im:7160358 Neighboring gene gastrula zinc finger protein XlCGF49.1-like Neighboring gene gastrula zinc finger protein XlCGF8.2DB-like Neighboring gene zgc:163077

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
expressed sequence AI877918; gastrula zinc finger protein XlCGF57.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    2155127..2163023 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021468947.1 → XP_021324622.1  gastrula zinc finger protein XlCGF57.1 isoform X2

    UniProtKB/TrEMBL
    A0A8M9P3H7
    Related
    ENSDARP00000150516.1, ENSDART00000182199.1
    Conserved Domains (3) summary
    COG5048
    Location:124 → 377
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:326 → 381
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:248 → 268
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_005160955.4 → XP_005161012.1  gastrula zinc finger protein XlCGF57.1 isoform X1

    UniProtKB/TrEMBL
    A0A8M2B7W7
    Conserved Domains (3) summary
    COG5048
    Location:186 → 439
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:310 → 330
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:322 → 347
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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