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arc3 amphibian RCA protein 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100145756, updated on 7-Sep-2023

Summary

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Official Symbol
arc3provided by Xenbase
Official Full Name
amphibian RCA protein 3provided by Xenbase
Primary source
Xenbase:XB-GENE-6454074
See related
Ensembl:ENSXETG00000017110
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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Genomic context

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See arc3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
16
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (62655942..62726968, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (75974483..76044816, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100492643 Neighboring gene adaptor related protein complex 4 subunit beta 1 Neighboring gene DNA cross-link repair 1B Neighboring gene amphibian RCA protein 2 Neighboring gene complement component 4 binding protein, alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Regulator of complement activation (RCA) gene cluster in Xenopus tropicalis. Oshiumi H, et al. Immunogenetics, 2009 May. PMID 19319518
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
amphibian RCA protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127127.1 → NP_001120599.1  amphibian RCA protein 3

    See identical proteins and their annotated locations for NP_001120599.1

    Status: PROVISIONAL

    Source sequence(s)
    BC161634
    UniProtKB/TrEMBL
    A0A803K424, B1WB66, F7DE91
    Related
    ENSXETP00000049117.4, ENSXETT00000049117.5
    Conserved Domains (3) summary
    cd00033
    Location:155 → 212
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    PHA02927
    Location:86 → 332
    PHA02927; secreted complement-binding protein; Provisional
    pfam00084
    Location:334 → 393
    Sushi; Sushi repeat (SCR repeat)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    62655942..62726968 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.