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ccdc170 coiled-coil domain containing 170 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100145067, updated on 8-Mar-2024

Summary

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Official Symbol
ccdc170provided by Xenbase
Official Full Name
coiled-coil domain containing 170provided by Xenbase
Primary source
Xenbase:XB-GENE-988262
See related
Ensembl:ENSXETG00000014590
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
c6orf97
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (48906865..48940333, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (37666149..37697287, complement)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene spectrin repeat containing, nuclear envelope 1 Neighboring gene estrogen receptor 1 Neighboring gene zinc finger and BTB domain containing 2 Neighboring gene syntaxin binding protein 5 (tomosyn)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
coiled-coil domain-containing protein 170

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    48906865..48940333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031902429.1 → XP_031758289.1  coiled-coil domain-containing protein 170 isoform X1

    UniProtKB/TrEMBL
    A0A803JRM3
    Related
    ENSXETP00000110644.1, ENSXETT00000108394.1
    Conserved Domains (1) summary
    TIGR02168
    Location:102 → 720
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_031902430.1 → XP_031758290.1  coiled-coil domain-containing protein 170 isoform X2

    UniProtKB/TrEMBL
    A0A6I8PL02
    Related
    ENSXETP00000058741.3, ENSXETT00000060701.3
    Conserved Domains (1) summary
    TIGR02168
    Location:11 → 616
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  3. XM_031902431.1 → XP_031758291.1  coiled-coil domain-containing protein 170 isoform X2

    UniProtKB/TrEMBL
    A0A6I8PL02
    Conserved Domains (1) summary
    TIGR02168
    Location:11 → 616
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
Nucleotide Protein Strain
Heading Accession and Version

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