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zranb1 zinc finger RANBP2-type containing 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100144659, updated on 8-Mar-2024

Summary

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Official Symbol
zranb1provided by Xenbase
Official Full Name
zinc finger RANBP2-type containing 1provided by Xenbase
Primary source
Xenbase:XB-GENE-876399
See related
Ensembl:ENSXETG00000023629
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
trabid; zranb1-a; zranb1-b
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (20355074..20388423, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (12045830..12081130, complement)

Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene acrosin-binding protein, gene 3 Neighboring gene uncharacterized LOC116412274 Neighboring gene C-terminal binding protein 2 Neighboring gene abraxas 2, BRISC complex subunit Neighboring gene EEF1A lysine methyltransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables K63-linked polyubiquitin modification-dependent protein binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables cysteine-type deubiquitinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
  
enables cysteine-type deubiquitinase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables cysteine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables peptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
  
involved_in cell migration IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within cell migration ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in cytoskeleton organization IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within cytoskeleton organization ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in positive regulation of Wnt signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within positive regulation of Wnt signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in protein K29-linked deubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within protein K29-linked deubiquitination ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in protein K33-linked deubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within protein K33-linked deubiquitination ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within protein K63-linked deubiquitination ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within proteolysis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of cell morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
is_active_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
ubiquitin thioesterase zranb1
Names
Zinc finger Ran-binding domain-containing protein 1
zinc finger, RAN-binding domain containing 1
NP_001116900.1
XP_017950738.1
XP_031760659.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001123428.1 → NP_001116900.1  ubiquitin thioesterase zranb1

    See identical proteins and their annotated locations for NP_001116900.1

    Status: PROVISIONAL

    Source sequence(s)
    BC161086
    UniProtKB/Swiss-Prot
    B1H2Q2
    Related
    ENSXETP00000102041.1, ENSXETT00000106711.1
    Conserved Domains (4) summary
    smart00547
    Location:147 → 170
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:8 → 27
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam18418
    Location:239 → 334
    AnkUBD; Ankyrin ubiquitin-binding domain
    cd22767
    Location:398 → 584
    OTU_ZRANB1; OTU (ovarian tumor) domain of Ubiquitin thioesterase ZRANB1 and similar proteins

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    20355074..20388423 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018095249.2 → XP_017950738.1  ubiquitin thioesterase zranb1 isoform X2

    UniProtKB/TrEMBL
    A0A6I8SFJ4
    Related
    ENSXETP00000091228.1, ENSXETT00000088931.2
    Conserved Domains (4) summary
    smart00547
    Location:147 → 170
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:8 → 27
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam02338
    Location:407 → 555
    OTU; OTU-like cysteine protease
    pfam18418
    Location:239 → 334
    AnkUBD; Ankyrin ubiquitin-binding domain

  2. XM_031904799.1 → XP_031760659.1  ubiquitin thioesterase zranb1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8S918, F6YRP5
    Related
    ENSXETP00000111565.1, ENSXETT00000124154.1
    Conserved Domains (4) summary
    smart00547
    Location:147 → 170
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:8 → 27
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam02338
    Location:431 → 579
    OTU; OTU-like cysteine protease
    pfam18418
    Location:239 → 334
    AnkUBD; Ankyrin ubiquitin-binding domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B1H2Q2.1 GenPept UniProtKB/Swiss-Prot:B1H2Q2

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