sox6 SRY-box 6 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: sox6provided by Xenbase
Official Full Name: SRY-box 6provided by Xenbase
Primary source: Xenbase:XB-GENE-483934
See related: Ensembl:ENSXETG00000016058
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: hssox6
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 4

Exon count:: 18

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	4	NC_030680.2 (2586555..2914323)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	Unplaced Scaffold	NW_016683404.1 (134377..392451, complement)

Chromosome 4 - NC_030680.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA binding	ISS Inferred from Sequence or Structural Similarity more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cartilage condensation	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within cartilage development	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within cell differentiation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within chondrocyte differentiation	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: transcription factor Sox-6

Names: SRY (sex determining region Y)-box 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001123415.1 → NP_001116887.1 transcription factor Sox-6

See identical proteins and their annotated locations for NP_001116887.1

Status: PROVISIONAL

Source sequence(s)

BC161247

UniProtKB/Swiss-Prot

B1H349

UniProtKB/TrEMBL

A0A803J3Q9

Related

ENSXETP00000102473.1, ENSXETT00000115578.1

Conserved Domains (1) summary

cd22042
Location:568 → 645

HMG-box_EGL13-like; high mobility group (HMG)-box found in Caenorhabditis elegans protein egg laying defective 13 (EGL-13) and similar proteins

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

2586555..2914323

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_031899826.1 → XP_031755686.1 transcription factor Sox-6 isoform X2

UniProtKB/TrEMBL

A0A803J3Q9, A0A8J1JGA3

Conserved Domains (1) summary

cd01388
Location:595 → 666

SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
XM_031899825.1 → XP_031755685.1 transcription factor Sox-6 isoform X1

UniProtKB/TrEMBL

A0A6I8T1C2, A0A803J3Q9

Related

ENSXETP00000104266.1, ENSXETT00000122766.1

Conserved Domains (1) summary

cd01388
Location:596 → 667

SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
XM_031899827.1 → XP_031755687.1 transcription factor Sox-6 isoform X3

UniProtKB/TrEMBL

A0A803J3Q9, A0A8J1JCS8

Conserved Domains (1) summary

cd01388
Location:457 → 528

SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...