These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001015053.1 → NP_001015053.1 histone deacetylase 5 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) represents the longer transcript and encodes the longer isoform (3).
- Source sequence(s)
-
AB011172, AC023855, BC051824, CN290533
- Consensus CDS
-
CCDS32663.1
- UniProtKB/Swiss-Prot
-
Q9UQL6
- Related
- ENSP00000225983, ENST00000225983
- Conserved Domains (2) summary
-
- COG0123
Location:684 – 1034
Blast Score: 545
- AcuC; Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
- cl02986
Location:699 – 1024
Blast Score: 813
- Hist_deacetyl; Histone deacetylase domain
-
NM_005474.4 → NP_005465.2 histone deacetylase 5 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) uses an alternate in-frame splice site compared to variant 3. The resulting isoform (1) has the same N- and C-termini but is 1 aa shorter compared to isoform 3.
- Source sequence(s)
-
AB011172, AC023855, BC051824, BM564861, CN290533
- Consensus CDS
-
CCDS45696.1
- UniProtKB/Swiss-Prot
-
Q9UQL6
- Related
- ENSP00000377244, ENST00000393622
- Conserved Domains (2) summary
-
- COG0123
Location:683 – 1033
Blast Score: 545
- AcuC; Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
- cl02986
Location:698 – 1023
Blast Score: 813
- Hist_deacetyl; Histone deacetylase domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000017.10 Reference GRCh37.p5 Primary Assembly
- Range
- 42154121..42201014, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000149.1 Alternate HuRef
- Range
- 37918049..37965007, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the cited
reason(s). Suppressed RefSeqs do not appear in BLAST databases, related sequence links,
or BLAST links (BLink), but may still be retrieved by clicking on their
accession.version below.
-
NM_139205.1: Suppressed sequence
- Description
- NM_139205.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.